PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3BG057260.4
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 370aa    MW: 42196.1 Da    PI: 4.9593
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3BG057260.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32.1e-0692115226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       k  lC ff + G+C+ G +CkF+H+
  TRIDC3BG057260.4  92 KSILCEFFKA-GQCQKGFKCKFSHD 115
                       6679**7777.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    
MPPKKAAASK ADVAKKQKVV EDKTFGLKNK NKSKNVQKYV QSLHQSVQPK PDPTKTAAKK  60
KKEEEKAREK ELNDLFKVAV SQPKVPVGVD PKSILCEFFK AGQCQKGFKC KFSHDLNVQR  120
KGEKIDIYSD KRDGEEEDTM DDWDQETLEK VIASKNAEYQ QNKPTDIVCK HFLDAVEKKQ  180
YGWFWVCPNG GKECRYRHAL PPGYILKSQM KALLEEESKK VAIEDEIEDQ RRKVQTTTPM  240
TTELFMEWKR RKAEEKEAGL AALRADRAKN DRMSGRELFM ADASVFIDDA EAYEVYERRE  300
EPQANQEQGK KSQDEGPSSS TSNGKEADEE LDDEDIDDDD DLDLDELNEL EASLSRTSIQ  360
IREPGEGTSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231252RRKVQTTTPMTTELFMEWKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-146C3H family protein