PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG049090.7

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 660aa MW: 71395 Da PI: 8.2956

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG049090.7	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	78.2	8.5e-25	127	228	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ + + s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F + TRIDC3BG049090.7 127 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyqQ-IR-PSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--R 215 99**************************9843.43.4569********************************************..3 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++el+++v+r+ TRIDC3BG049090.7 216 GDDGELRLGVRRA 228 489999*9986 PP
2	Auxin_resp	111.6	7.7e-37	253	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 +a++++++svF+++YnPra++seF+v+++k++k+l++++++GmRfk+++ +ed++err sG+++g++++dp+rW++SkW+sL+ TRIDC3BG049090.7 253 VANSLKHRSVFHICYNPRAAASEFIVPYWKFLKSLNRPFCIGMRFKIQYGSEDVNERR-SGMITGINEVDPIRWTGSKWKSLQ 334 68999***************************************************.9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence
MGIDLNAADE PGKAAAVSVC RDLWHACAGP VVALPRRGSA VVYLPQAHLA AAGGGGDVPV 60 ALPPHVACRV VDVELCADPA TDEVYARLAM VAEGEIFEKN MGGGRFEGED DMEDGDRERK 120 SRMLHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYQQ IRPSQELVAK DLHGAKWRFR 180 HIYRGQPRRH LLTTGWSSFV NKKKLVSGDA VLFLRGDDGE LRLGVRRAIQ LKNEALLKAF 240 NSNSSKIHTL SAVANSLKHR SVFHICYNPR AAASEFIVPY WKFLKSLNRP FCIGMRFKIQ 300 YGSEDVNERR SGMITGINEV DPIRWTGSKW KSLQVRWEDG TDCNSQNRLS PWDIEIVGGS 360 VSIAQSLSAS SSKRTKLCPQ GNVDVPTLYG NVRPDSVGAD KLPRVLQGQE LMGSGTHRVT 420 CPPQPGGATE FRRYDGTGFL TDTRSCLLSG PASRLPPQSS YFAYQPVGFG ESVGFPEVLQ 480 GQEVCQTVPL YQGMVSDTCS AKAGYGMYNY MRTSSAMNGG FSSAPQGYPL SLSTPPRAVA 540 ASPSSAAVPP QLWLASKSNE EAANGSQLNP FGIRKVPGDG AAKLGDGAAK LGSDGRKVAR 600 TSCMLFGFSL TEKMLPTEED SAKEGNHEVD CQNPRMLDLF GYNRATPGTL HALCAAPLGI

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence

MGIDLNAADE PGKAAAVSVC RDLWHACAGP VVALPRRGSA VVYLPQAHLA AAGGGGDVPV  60
ALPPHVACRV VDVELCADPA TDEVYARLAM VAEGEIFEKN MGGGRFEGED DMEDGDRERK  120
SRMLHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYQQ IRPSQELVAK DLHGAKWRFR  180
HIYRGQPRRH LLTTGWSSFV NKKKLVSGDA VLFLRGDDGE LRLGVRRAIQ LKNEALLKAF  240
NSNSSKIHTL SAVANSLKHR SVFHICYNPR AAASEFIVPY WKFLKSLNRP FCIGMRFKIQ  300
YGSEDVNERR SGMITGINEV DPIRWTGSKW KSLQVRWEDG TDCNSQNRLS PWDIEIVGGS  360
VSIAQSLSAS SSKRTKLCPQ GNVDVPTLYG NVRPDSVGAD KLPRVLQGQE LMGSGTHRVT  420
CPPQPGGATE FRRYDGTGFL TDTRSCLLSG PASRLPPQSS YFAYQPVGFG ESVGFPEVLQ  480
GQEVCQTVPL YQGMVSDTCS AKAGYGMYNY MRTSSAMNGG FSSAPQGYPL SLSTPPRAVA  540
ASPSSAAVPP QLWLASKSNE EAANGSQLNP FGIRKVPGDG AAKLGDGAAK LGSDGRKVAR  600
TSCMLFGFSL TEKMLPTEED SAKEGNHEVD CQNPRMLDLF GYNRATPGTL HALCAAPLGI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-148	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG049090.7