PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG049090.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 477aa MW: 51584.4 Da PI: 9.2015

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG049090.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.3	1.7e-10	3	45	55	99
ETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 55 ksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++r++lt+GW++Fv+ ++L +gD v+F + +++el+++v+r+ TRIDC3BG049090.6 3 QPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RGDDGELRLGVRRA 45 6899***********************..3489999*9986 PP
2	Auxin_resp	112.3	4.7e-37	70	151	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 +a++++++svF+++YnPra++seF+v+++k++k+l++++++GmRfk+++ +ed++err sG+++g++++dp+rW++SkW+sL+ TRIDC3BG049090.6 70 VANSLKHRSVFHICYNPRAAASEFIVPYWKFLKSLNRPFCIGMRFKIQYGSEDVNERR-SGMITGINEVDPIRWTGSKWKSLQ 151 68999***************************************************.9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
EGQPRRHLLT TGWSSFVNKK KLVSGDAVLF LRGDDGELRL GVRRAIQLKN EALLKAFNSN 60 SSKIHTLSAV ANSLKHRSVF HICYNPRAAA SEFIVPYWKF LKSLNRPFCI GMRFKIQYGS 120 EDVNERRSGM ITGINEVDPI RWTGSKWKSL QVRWEDGTDC NSQNRLSPWD IEIVGGSVSI 180 AQSLSASSSK RTKLCPQGNV DVPTLYGNVR PDSVGADKLP RVLQGQELMG SGTHRVTCPP 240 QPGGATEFRR YDGTGFLTDT RSCLLSGPAS RLPPQSSYFA YQPVGFGESV GFPEVLQGQE 300 VCQTVPLYQG MVSDTCSAKA GYGMYNYMRT SSAMNGGFSS APQGYPLSLS TPPRAVAASP 360 SSAAVPPQLW LASKSNEEAA NGSQLNPFGI RKVPGDGAAK LGDGAAKLGS DGRKVARTSC 420 MLFGFSLTEK MLPTEEDSAK EGNHEVDCQN PRMLDLFGYN RATPGTLHAL CAAPLGI

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

EGQPRRHLLT TGWSSFVNKK KLVSGDAVLF LRGDDGELRL GVRRAIQLKN EALLKAFNSN  60
SSKIHTLSAV ANSLKHRSVF HICYNPRAAA SEFIVPYWKF LKSLNRPFCI GMRFKIQYGS  120
EDVNERRSGM ITGINEVDPI RWTGSKWKSL QVRWEDGTDC NSQNRLSPWD IEIVGGSVSI  180
AQSLSASSSK RTKLCPQGNV DVPTLYGNVR PDSVGADKLP RVLQGQELMG SGTHRVTCPP  240
QPGGATEFRR YDGTGFLTDT RSCLLSGPAS RLPPQSSYFA YQPVGFGESV GFPEVLQGQE  300
VCQTVPLYQG MVSDTCSAKA GYGMYNYMRT SSAMNGGFSS APQGYPLSLS TPPRAVAASP  360
SSAAVPPQLW LASKSNEEAA NGSQLNPFGI RKVPGDGAAK LGDGAAKLGS DGRKVARTSC  420
MLFGFSLTEK MLPTEEDSAK EGNHEVDCQN PRMLDLFGYN RATPGTLHAL CAAPLGI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	4e-72	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG049090.6