PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3BG041010.5
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 566aa    MW: 62640.5 Da    PI: 8.0272
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3BG041010.5genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.81.5e-21296899
                      -HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                B3  8 sdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                      sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   +++++ l+++v
  TRIDC3BG041010.5  2 SDTSTHGGFSVPRRAAEDCfppldyNLQRP-SQELVTKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RDEDGVLRLGV 93
                      8999*******************9966654.469999*********************************************..56889899999 PP

                      E-S CS
                B3 97 frk 99
                      +r+
  TRIDC3BG041010.5 94 RRA 96
                      986 PP
2Auxin_resp104.51.3e-34121201182
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                       +aha++ k++F+++YnPr ++seF+v+++k++++++ ++svGmRfkm++e+ed+serr +G+++g +++dp + ++SkW++L
  TRIDC3BG041010.5 121 VAHAVAVKNIFHIYYNPRLCESEFIVPYWKFMRSFSEPISVGMRFKMKYENEDASERRSTGIITGSRESDP-KSHGSKWKCL 201
                       799********************************************************************.*********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    
ASDTSTHGGF SVPRRAAEDC FPPLDYNLQR PSQELVTKDL HGTEWRFRHI YRGQPRRHLL  60
TTGWSAFVNK KKLVSGDAVL FLRDEDGVLR LGVRRAAQLK NVSPFPALFN QDSSLSSLGN  120
VAHAVAVKNI FHIYYNPRLC ESEFIVPYWK FMRSFSEPIS VGMRFKMKYE NEDASERRST  180
GIITGSRESD PKSHGSKWKC LVVRWDDDVE CRWPNRVSPW EIELTGSVSG SHLSSPHSKR  240
LKPCLPQVNP DMLLPTILAG GSVSSDFAES ARFHKVLQGQ ELLGSKTHDG TANSASRASE  300
ARNFQYSDDR NCSINMSNIP GVPELGARTP PENHGFSYHC SGFGESQRFQ RVLQGQEVFH  360
PYEGGTLSDA VIRGSSFCQP DGNCTSGATY KWLTSQGCDY SGPVTLAMPQ ASSPLSVLMF  420
PQTSSKIHGF EYVCRSLDKD DNIRHVTVNA TQDMGRTSHT LPLWPHLVSG KAIASCTGTK  480
KLHSISSAEH EPNDKDVHTN GCKIFGISLT QKVRVCNEVE CSSANCDFQP LKPQMSKSLG  540
NNCATVHEQR PAVGMVVDLS AVDTMI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-104ARF family protein