PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG041010.19

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 564aa MW: 62726.4 Da PI: 7.8954

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG041010.19	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	76.6	2.7e-24	30	131	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + TRIDC3BG041010.19 30 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyNLQRP-SQELVTKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--R 118 99**************************9966654.469999*******************************************..5 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 ++++ l+++v+r+ TRIDC3BG041010.19 119 DEDGVLRLGVRRA 131 6889899999986 PP
2	Auxin_resp	104.5	1.3e-34	156	236	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +aha++ k++F+++YnPr ++seF+v+++k++++++ ++svGmRfkm++e+ed+serr +G+++g +++dp + ++SkW++L TRIDC3BG041010.19 156 VAHAVAVKNIFHIYYNPRLCESEFIVPYWKFMRSFSEPISVGMRFKMKYENEDASERRSTGIITGSRESDP-KSHGSKWKCL 236 799******************************************************************.*******9 PP

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence
MRPGESEEAC EGDSEDTDAA KRRARMPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD 60 YNLQRPSQEL VTKDLHGTEW RFRHIYRGQP RRHLLTTGWS AFVNKKKLVS GDAVLFLRDE 120 DGVLRLGVRR AAQLKNVSPF PALFNQDSSL SSLGNVAHAV AVKNIFHIYY NPRLCESEFI 180 VPYWKFMRSF SEPISVGMRF KMKYENEDAS ERRSTGIITG SRESDPKSHG SKWKCLVVRW 240 DDDVECRWPN RVSPWEIELT GSVSGSHLSS PHSKRLKPCL PQVNPDMLLP SGSVSSDFAE 300 SARFHKVLQG QELLGSKTHD GTANSASRAS EARNFQYSDD RNCSINMSNI PGVPELGART 360 PPENHGFSYH CSGFGESQRF QRVLQGQEVF HPYEGGTLSD AVIRGSSFCQ PDGNCTSGAT 420 YKWLTSQGCD YSGPVTLAMP QASSPLSVLM FPQTSSKIHG FEYVCRSLDK DDNIRHVTVN 480 ATQDMGRTSH TLPLWPHLVS GKAIASCTGT KKLHSISSAE HEPNDKDVHT NGCKIFGISL 540 TQKVRVCNEV ECSSANCDFQ PLKP

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence

MRPGESEEAC EGDSEDTDAA KRRARMPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD  60
YNLQRPSQEL VTKDLHGTEW RFRHIYRGQP RRHLLTTGWS AFVNKKKLVS GDAVLFLRDE  120
DGVLRLGVRR AAQLKNVSPF PALFNQDSSL SSLGNVAHAV AVKNIFHIYY NPRLCESEFI  180
VPYWKFMRSF SEPISVGMRF KMKYENEDAS ERRSTGIITG SRESDPKSHG SKWKCLVVRW  240
DDDVECRWPN RVSPWEIELT GSVSGSHLSS PHSKRLKPCL PQVNPDMLLP SGSVSSDFAE  300
SARFHKVLQG QELLGSKTHD GTANSASRAS EARNFQYSDD RNCSINMSNI PGVPELGART  360
PPENHGFSYH CSGFGESQRF QRVLQGQEVF HPYEGGTLSD AVIRGSSFCQ PDGNCTSGAT  420
YKWLTSQGCD YSGPVTLAMP QASSPLSVLM FPQTSSKIHG FEYVCRSLDK DDNIRHVTVN  480
ATQDMGRTSH TLPLWPHLVS GKAIASCTGT KKLHSISSAE HEPNDKDVHT NGCKIFGISL  540
TQKVRVCNEV ECSSANCDFQ PLKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-116	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG041010.19