PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG060020.7

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 284aa MW: 32134.6 Da PI: 9.0768

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG060020.7	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.4	7.5e-11	26	52	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H++ TRIDC3AG060020.7 26 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 52 5789*********************97 PP
2	zf-CCCH	38.8	1.5e-12	73	97	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ TRIDC3AG060020.7 73 QPECQYYLKTGTCKFGPTCKFHHPR 97 799********************96 PP
3	zf-CCCH	38.9	1.4e-12	119	143	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ TRIDC3AG060020.7 119 ERECAYYLKTGQCKYGNTCKFNHPE 143 799********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence
NAEGMWQQMA MSSSATMQSG PYPVRPGEPD CTYYLRTGLC RFGMSCRFNH PQDRNTAIAS 60 ARMKGEYPER VGQPECQYYL KTGTCKFGPT CKFHHPREKA GIAGMVQLNT LGYPLRPNER 120 ECAYYLKTGQ CKYGNTCKFN HPEIFNAVAS SRGSPIYPPV HNSGSTGPHS YTGTMASWTY 180 PRGSFIPSPR WQSPSNYTPM IVPQGLVQVP SWNSYPVRSS HFIVMQYNEF SLSHDVFVCS 240 FPRPTEGKHK KYISLKSQLL TYPFPFVWIS ASLTFDPCFV SWLC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	3e-83	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG060020.7