PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3AG060020.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 398aa MW: 43930.7 Da PI: 9.015 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.8 | 1.2e-10 | 37 | 63 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H++ TRIDC3AG060020.6 37 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 63 5789*********************97 PP | |||||||
2 | zf-CCCH | 38.2 | 2.4e-12 | 84 | 108 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ TRIDC3AG060020.6 84 QPECQYYLKTGTCKFGPTCKFHHPR 108 799********************96 PP | |||||||
3 | zf-CCCH | 38.3 | 2.2e-12 | 130 | 154 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ TRIDC3AG060020.6 130 ERECAYYLKTGQCKYGNTCKFNHPE 154 799********************96 PP | |||||||
4 | zf-CCCH | 34.7 | 2.9e-11 | 291 | 316 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG Ck+G+ CkF+H++ TRIDC3AG060020.6 291 DQPECIYYIKTGDCKFGAVCKFHHPR 316 689*********************96 PP | |||||||
5 | zf-CCCH | 41.8 | 1.8e-13 | 336 | 362 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G +CkF H++ TRIDC3AG060020.6 336 PGEELCKFYSRYGICKFGVNCKFDHPM 362 689**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence |
VSAISCGISG RSHEGMWQQM AMSSSATMQS GPYPVRPGEP DCTYYLRTGL CRFGMSCRFN 60 HPQDRNTAIA SARMKGEYPE RVGQPECQYY LKTGTCKFGP TCKFHHPREK AGIAGMVQLN 120 TLGYPLRPNE RECAYYLKTG QCKYGNTCKF NHPEIFNAVA SSRGSPIYPP VHNSGSTGPH 180 SYTGTMASWT YPRGSFIPSP RWQSPSNYTP MIVPQGLVQV PSWNSYPGQM VPVSSPESRL 240 QSPGAQQYYG TSRQGEASAG NQGMQSSYRS SSFPAPQYAL QRENVFPERP DQPECIYYIK 300 TGDCKFGAVC KFHHPRVRSQ PPPDCILSPM GLPLRPGEEL CKFYSRYGIC KFGVNCKFDH 360 PMAAPMGVYA YGYSASASPN APMARRLLES PSGSAYAS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-139 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3AG060020.6 |