PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3AG060020.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 385aa MW: 42843.5 Da PI: 9.1742 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.9 | 1.1e-10 | 34 | 60 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H++ TRIDC3AG060020.5 34 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 60 5789*********************97 PP | |||||||
2 | zf-CCCH | 38.3 | 2.3e-12 | 81 | 105 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ TRIDC3AG060020.5 81 QPECQYYLKTGTCKFGPTCKFHHPR 105 799********************96 PP | |||||||
3 | zf-CCCH | 38.4 | 2.1e-12 | 127 | 151 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ TRIDC3AG060020.5 127 ERECAYYLKTGQCKYGNTCKFNHPE 151 799********************96 PP | |||||||
4 | zf-CCCH | 34.8 | 2.8e-11 | 278 | 303 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG Ck+G+ CkF+H++ TRIDC3AG060020.5 278 DQPECIYYIKTGDCKFGAVCKFHHPR 303 689*********************96 PP | |||||||
5 | zf-CCCH | 41.9 | 1.7e-13 | 323 | 349 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G +CkF H++ TRIDC3AG060020.5 323 PGEELCKFYSRYGICKFGVNCKFDHPM 349 689**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence |
FSRFVCVRNA EGMWQQMAMS SSATMQSGPY PVRPGEPDCT YYLRTGLCRF GMSCRFNHPQ 60 DRNTAIASAR MKGEYPERVG QPECQYYLKT GTCKFGPTCK FHHPREKAGI AGMVQLNTLG 120 YPLRPNEREC AYYLKTGQCK YGNTCKFNHP EIFNAVASSR GSPIYPPVHN SGSTGPHSYT 180 GTMASWTYPR GSFIPSPRWQ SPSNYTPMIV PQGLVQVPSW NSYPSRLQSP GAQQYYGTSR 240 QGEASAGNQG MQSSYRSSSF PAPQYALQRE NVFPERPDQP ECIYYIKTGD CKFGAVCKFH 300 HPRVRSQPPP DCILSPMGLP LRPGEELCKF YSRYGICKFG VNCKFDHPMA APMGVYAYGY 360 SASASPNAPM ARRLLESPSG SAYAS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-138 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3AG060020.5 |