PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3AG060020.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 419aa MW: 46527.8 Da PI: 9.3841 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.7 | 1.2e-10 | 58 | 84 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H++ TRIDC3AG060020.4 58 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 84 5789*********************97 PP | |||||||
2 | zf-CCCH | 38.1 | 2.5e-12 | 105 | 129 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ TRIDC3AG060020.4 105 QPECQYYLKTGTCKFGPTCKFHHPR 129 799********************96 PP | |||||||
3 | zf-CCCH | 38.2 | 2.3e-12 | 151 | 175 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ TRIDC3AG060020.4 151 ERECAYYLKTGQCKYGNTCKFNHPE 175 799********************96 PP | |||||||
4 | zf-CCCH | 34.7 | 3.1e-11 | 312 | 337 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG Ck+G+ CkF+H++ TRIDC3AG060020.4 312 DQPECIYYIKTGDCKFGAVCKFHHPR 337 689*********************96 PP | |||||||
5 | zf-CCCH | 41.7 | 1.9e-13 | 357 | 383 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G +CkF H++ TRIDC3AG060020.4 357 PGEELCKFYSRYGICKFGVNCKFDHPM 383 689**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence |
RVRHPSSKLF PSGMVINTGV RGQTHHQKIQ DMKVEGMWQQ MAMSSSATMQ SGPYPVRPGE 60 PDCTYYLRTG LCRFGMSCRF NHPQDRNTAI ASARMKGEYP ERVGQPECQY YLKTGTCKFG 120 PTCKFHHPRE KAGIAGMVQL NTLGYPLRPN ERECAYYLKT GQCKYGNTCK FNHPEIFNAV 180 ASSRGSPIYP PVHNSGSTGP HSYTGTMASW TYPRGSFIPS PRWQSPSNYT PMIVPQGLVQ 240 VPSWNSYPGQ MVPVSSPESR LQSPGAQQYY GTSRQGEASA GNQGMQSSYR SSSFPAPQYA 300 LQRENVFPER PDQPECIYYI KTGDCKFGAV CKFHHPRVRS QPPPDCILSP MGLPLRPGEE 360 LCKFYSRYGI CKFGVNCKFD HPMAAPMGVY AYGYSASASP NAPMARRLLE SPSGSAYAS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-139 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3AG060020.4 |