PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3AG060020.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 325aa MW: 35944.7 Da PI: 9.043 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.6 | 1.8e-12 | 11 | 35 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ TRIDC3AG060020.2 11 QPECQYYLKTGTCKFGPTCKFHHPR 35 799********************96 PP | |||||||
2 | zf-CCCH | 38.7 | 1.7e-12 | 57 | 81 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ TRIDC3AG060020.2 57 ERECAYYLKTGQCKYGNTCKFNHPE 81 799********************96 PP | |||||||
3 | zf-CCCH | 35.1 | 2.2e-11 | 218 | 243 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG Ck+G+ CkF+H++ TRIDC3AG060020.2 218 DQPECIYYIKTGDCKFGAVCKFHHPR 243 689*********************96 PP | |||||||
4 | zf-CCCH | 42.2 | 1.4e-13 | 263 | 289 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G +CkF H++ TRIDC3AG060020.2 263 PGEELCKFYSRYGICKFGVNCKFDHPM 289 689**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence |
MKGEYPERVG QPECQYYLKT GTCKFGPTCK FHHPREKAGI AGMVQLNTLG YPLRPNEREC 60 AYYLKTGQCK YGNTCKFNHP EIFNAVASSR GSPIYPPVHN SGSTGPHSYT GTMASWTYPR 120 GSFIPSPRWQ SPSNYTPMIV PQGLVQVPSW NSYPGQMVPV SSPESRLQSP GAQQYYGTSR 180 QGEASAGNQG MQSSYRSSSF PAPQYALQRE NVFPERPDQP ECIYYIKTGD CKFGAVCKFH 240 HPRVRSQPPP DCILSPMGLP LRPGEELCKF YSRYGICKFG VNCKFDHPMA APMGVYAYGY 300 SASASPNAPM ARRLLESPSG SAYAS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-112 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3AG060020.2 |