PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC3AG050850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 370aa MW: 42221.1 Da PI: 4.9593 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.6 | 6.8e-06 | 92 | 115 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff G+C+ G +CkF+H+ TRIDC3AG050850.1 92 KSILCEFFKV-GQCQKGFKCKFSHD 115 6779**9999.*************7 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 370 aa Download sequence |
MPPKKAAASK ADVAKKQKVV EDKTFGLKNK NKSKNVQKYV QSLHQSVQPK PDPTKTAAKK 60 KKEEEKAREK ELNDLFKVAV SQPKVPVGVD PKSILCEFFK VGQCQKGFKC KFSHDLNVQR 120 KGEKIDIYSD KRDGEEEDTM DDWDQETLEK VIASKNAEYQ QNKPTDIVCK HFLDAVEKKQ 180 YGWFWVCPNG GKECRYRHAL PPGYVLKSQM KALLEEESKK VAIEDEIEDQ RRKVQTTTPM 240 TTELFMEWKR RKAEEKEAGL AALRADRAKN DRMSGRELFM ADASVFIDDA EAYEVYERRE 300 EPQANQEQGK KSQDEGPSSS TSNGKEADEE PDDEDLDDDD DLDLDELNEL EASLSRTNIQ 360 IREPGEGTSS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 231 | 252 | RRKVQTTTPMTTELFMEWKRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G20280.1 | 1e-145 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC3AG050850.1 |