PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG076330.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SBP

Protein Properties

Length: 408aa MW: 43960.4 Da PI: 7.6642

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG076330.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.6	2.3e-40	178	256	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++ TRIDC2BG076330.4 178 RCQAEGCKADLSGAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 256 6****************************98725689***********************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MMNLPAAAGN SCDEFGYGAP DPPPPSLFPI MDHQEGGGGI HREHDHHHHH HLGGYSLEPS 60 SLALLPPSSH ATIAAHSPHD ILQFYHHPTS HHYLAAAAAG GNGSPYGQFG GGGSAGGFQS 120 YYHQQVGTGA PEYYFPTLVS SAEENMASFA ATQLGLNLGY RTYFPPRGGY TYGHHPPRCQ 180 AEGCKADLSG AKRYHRRHKV CEHHSKAPVV VTAGGLHQRF CQQCSRFHLL DEFDDAKKSC 240 RKRLADHNRR RRKSKPSEAD AADKRRTQAS KAASTKGKAA GSSSKSTGTG DGMDIQVQLG 300 SGDLSKNQDE TMGLGEVVKE MQVDPKGKAS MQQQQGHHGH GLHLQSQHGF PFPSSSAGSC 360 FPQSQAVSST DNTSNIGQVQ QEQPGLGFHQ HSNILQLGQA MFDLDFDH

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MMNLPAAAGN SCDEFGYGAP DPPPPSLFPI MDHQEGGGGI HREHDHHHHH HLGGYSLEPS  60
SLALLPPSSH ATIAAHSPHD ILQFYHHPTS HHYLAAAAAG GNGSPYGQFG GGGSAGGFQS  120
YYHQQVGTGA PEYYFPTLVS SAEENMASFA ATQLGLNLGY RTYFPPRGGY TYGHHPPRCQ  180
AEGCKADLSG AKRYHRRHKV CEHHSKAPVV VTAGGLHQRF CQQCSRFHLL DEFDDAKKSC  240
RKRLADHNRR RRKSKPSEAD AADKRRTQAS KAASTKGKAA GSSSKSTGTG DGMDIQVQLG  300
SGDLSKNQDE TMGLGEVVKE MQVDPKGKAS MQQQQGHHGH GLHLQSQHGF PFPSSSAGSC  360
FPQSQAVSST DNTSNIGQVQ QEQPGLGFHQ HSNILQLGQA MFDLDFDH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	249	266	RRRRKSKPSEADAADKRR
2	249	278	RRRRKSKPSEADAADKRRTQASKAASTKGK
3	250	255	RRRKSK
4	250	279	RRRRKSKPSEADAADKRRTQASKAASTKGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	1e-42	SBP family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG076330.4