PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC2BG050100.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 162aa    MW: 18631.3 Da    PI: 10.1864
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC2BG050100.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.12.3e-281059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      ri+n++ rqvtfskRrngi+KKA+EL +LCdaev ++ifsstg+lyey+s
  TRIDC2BG050100.1 10 RIDNSTSRQVTFSKRRNGIFKKAKELGILCDAEVGLVIFSSTGRLYEYAS 59
                      8***********************************************86 PP
2K-box78.61.5e-2675156384
             K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                       +++ +++ +++ + +q+e+a L+++++nLq+++R+l G+dL+ + +keLq Le+qLe sl+ iR+kK+++l+++i+el +k 
  TRIDC2BG050100.1  75 EQQLVANPNSELKFWQREAASLRQQLHNLQENHRQLTGQDLSGMGVKELQTLENQLEISLRCIRTKKDQILIDEIHELNHKV 156
                       56677788999*******************************************************************9996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KAKELGILCD AEVGLVIFSS TGRLYEYASS  60
SMKSVIDRYG RAKEEQQLVA NPNSELKFWQ REAASLRQQL HNLQENHRQL TGQDLSGMGV  120
KELQTLENQL EISLRCIRTK KDQILIDEIH ELNHKVLQHL SV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.12e-80MIKC_MADS family protein