PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG030260.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 608aa MW: 65248.1 Da PI: 8.0463

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG030260.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.4e-08	215	237	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f+r G C+ Gd+C F+Hg TRIDC2BG030260.3 215 VPCPNFRRPGGCPSGDNCEFSHG 237 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence
KAYEPRTPLM VAATYGSARV VSLLLGRAGW VDVARRPGGD GFTPLHCAAS GGSCNAVQVV 60 KMLLDAGADP ATVDSTGRAP ADVVRAHPAS ADALGDLEIL LGRRRALAVA TSAASGASSP 120 PLSSSPDDEG NRSPSSRSSS LSPITVDRAK KEYPVDPTLP DIKSSVYASD EFRMFAFKVR 180 PCSRAYSHDW TECPFVHPGE NARRRDPRKH PYTAVPCPNF RRPGGCPSGD NCEFSHGVFE 240 SWLHPTQYRT RLCKEGAACA RRICFFAHDE DELRHVPHNS GAGLLSPRAT SSIDMTAAAA 300 LGLLPGSPRH FVPPPGSPSA VNNGGAASAH WLQGSRLRSS FNARDATVED LGLLLDWESQ 360 YLGALCLPPS SRPQPRLSTG LSIRPTAIAP TSLEDMYASE MAMSPRFTND QGHSAYSPAH 420 KSAILNKLHQ QKGLLSPVNT NRMYSPRALD PAALVHSPIS GMSPRSPRLM EPTSPMSARF 480 GATVTQREMY EQFSSLNKHQ LPSVGSPRNS NAASWGNVGS SPMGKVDWGV DGEELDRLRC 540 PDQPGFAEKE PDAPWGRSLN SNRGEMQLGM SGGMASGSAN RPDWNNQADL LDQMAIGAWL 600 EQLQTDQK

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence

KAYEPRTPLM VAATYGSARV VSLLLGRAGW VDVARRPGGD GFTPLHCAAS GGSCNAVQVV  60
KMLLDAGADP ATVDSTGRAP ADVVRAHPAS ADALGDLEIL LGRRRALAVA TSAASGASSP  120
PLSSSPDDEG NRSPSSRSSS LSPITVDRAK KEYPVDPTLP DIKSSVYASD EFRMFAFKVR  180
PCSRAYSHDW TECPFVHPGE NARRRDPRKH PYTAVPCPNF RRPGGCPSGD NCEFSHGVFE  240
SWLHPTQYRT RLCKEGAACA RRICFFAHDE DELRHVPHNS GAGLLSPRAT SSIDMTAAAA  300
LGLLPGSPRH FVPPPGSPSA VNNGGAASAH WLQGSRLRSS FNARDATVED LGLLLDWESQ  360
YLGALCLPPS SRPQPRLSTG LSIRPTAIAP TSLEDMYASE MAMSPRFTND QGHSAYSPAH  420
KSAILNKLHQ QKGLLSPVNT NRMYSPRALD PAALVHSPIS GMSPRSPRLM EPTSPMSARF  480
GATVTQREMY EQFSSLNKHQ LPSVGSPRNS NAASWGNVGS SPMGKVDWGV DGEELDRLRC  540
PDQPGFAEKE PDAPWGRSLN SNRGEMQLGM SGGMASGSAN RPDWNNQADL LDQMAIGAWL  600
EQLQTDQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-134	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG030260.3