PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG030260.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 557aa MW: 59165.6 Da PI: 7.7524

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG030260.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.1	3.1e-08	279	301	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f+r G C+ Gd+C F+Hg TRIDC2BG030260.2 279 VPCPNFRRPGGCPSGDNCEFSHG 301 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
VQAMGDLPDL DRAQAAGAGR RDRLAALLEL AAADDVDGMR AALEGAGEEA AELADDVGLW 60 YGRSKAYEPR TPLMVAATYG SARVVSLLLG RAGWVDVARR PGGDGFTPLH CAASGGSCNA 120 VQVVKMLLDA GADPATVDST GRAPADVVRA HPASADALGD LEILLGRRRA LAVATSAASG 180 ASSPPLSSSP DDEGNRSPSS RSSSLSPITV DRAKKEYPVD PTLPDIKSSV YASDEFRMFA 240 FKVRPCSRAY SHDWTECPFV HPGENARRRD PRKHPYTAVP CPNFRRPGGC PSGDNCEFSH 300 GVFESWLHPT QYRTRLCKEG AACARRICFF AHDEDELRHV PHNSGAGLLS PRATSSIDMT 360 AAAALGLLPG SPRHFVPPPG SPSAVNNGGA ASAHWLQGSR LRSSFNARDA TVEDLGLLLD 420 WESQYLGALC LPPSSRPQPR LSTGLSIRPT AIAPTSLEDM YASEMAMSPR FTNDQGHSAY 480 SPAHKSAILN KLHQQKGLLS PVNTNRMYSP RALDPAALVH SPISGMSPRS PRLMEPTSPM 540 SARFGAPAAI RGLATEF

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

VQAMGDLPDL DRAQAAGAGR RDRLAALLEL AAADDVDGMR AALEGAGEEA AELADDVGLW  60
YGRSKAYEPR TPLMVAATYG SARVVSLLLG RAGWVDVARR PGGDGFTPLH CAASGGSCNA  120
VQVVKMLLDA GADPATVDST GRAPADVVRA HPASADALGD LEILLGRRRA LAVATSAASG  180
ASSPPLSSSP DDEGNRSPSS RSSSLSPITV DRAKKEYPVD PTLPDIKSSV YASDEFRMFA  240
FKVRPCSRAY SHDWTECPFV HPGENARRRD PRKHPYTAVP CPNFRRPGGC PSGDNCEFSH  300
GVFESWLHPT QYRTRLCKEG AACARRICFF AHDEDELRHV PHNSGAGLLS PRATSSIDMT  360
AAAALGLLPG SPRHFVPPPG SPSAVNNGGA ASAHWLQGSR LRSSFNARDA TVEDLGLLLD  420
WESQYLGALC LPPSSRPQPR LSTGLSIRPT AIAPTSLEDM YASEMAMSPR FTNDQGHSAY  480
SPAHKSAILN KLHQQKGLLS PVNTNRMYSP RALDPAALVH SPISGMSPRS PRLMEPTSPM  540
SARFGAPAAI RGLATEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-126	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG030260.2