PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2AG025720.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 476aa MW: 52006.3 Da PI: 8.2715

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2AG025720.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.4	2.5e-08	83	105	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f+r G C+ Gd+C F+Hg TRIDC2AG025720.3 83 VPCPNFRRPGGCPSGDNCEFSHG 105 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
SPSSRSSSLS PITVDRAKKE YPVDPTLPDI KSSVYASDEF RMFAFKVRPC SRAYSHDWTE 60 CPFVHPGENA RRRDPRKHPY TAVPCPNFRR PGGCPSGDNC EFSHGVFESW LHPTQYRTRL 120 CKEGAACARR ICFFAHDEDE LRYVPHNSGA GLLSPRATSS IDMTAAAALG LLPGSPRHFV 180 PPPGSPSAVN NGGAASAHWL QGSRLRSSFN ARDATVEDLG LLLDWESQYL GALCLPPSSR 240 PQPRLSTGLS IRPTAIAPTS LEDMYASQMA MSPRFTNDQG HSAYSPAHKS AILNKLHQQK 300 GLLSPVNTNR MYSPRALDPA ALVHSPIGGM SPRSPRLMEP TSPMSARFGA TVPQREMYEQ 360 FSNLNKHQLP SVGSPRNSNA ASWGNVGSSP MGKVDWGVDG EELDRLRCPD QPGFAEKEPD 420 APWGRSLNSN RGEMQLGMSG GMASGSANRP DWNNQADLLD QMAIGAWLEQ LQTDQK

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

SPSSRSSSLS PITVDRAKKE YPVDPTLPDI KSSVYASDEF RMFAFKVRPC SRAYSHDWTE  60
CPFVHPGENA RRRDPRKHPY TAVPCPNFRR PGGCPSGDNC EFSHGVFESW LHPTQYRTRL  120
CKEGAACARR ICFFAHDEDE LRYVPHNSGA GLLSPRATSS IDMTAAAALG LLPGSPRHFV  180
PPPGSPSAVN NGGAASAHWL QGSRLRSSFN ARDATVEDLG LLLDWESQYL GALCLPPSSR  240
PQPRLSTGLS IRPTAIAPTS LEDMYASQMA MSPRFTNDQG HSAYSPAHKS AILNKLHQQK  300
GLLSPVNTNR MYSPRALDPA ALVHSPIGGM SPRSPRLMEP TSPMSARFGA TVPQREMYEQ  360
FSNLNKHQLP SVGSPRNSNA ASWGNVGSSP MGKVDWGVDG EELDRLRCPD QPGFAEKEPD  420
APWGRSLNSN RGEMQLGMSG GMASGSANRP DWNNQADLLD QMAIGAWLEQ LQTDQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-111	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC2AG025720.3