PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2AG025720.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 669aa MW: 71481 Da PI: 6.7841

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2AG025720.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.8	3.8e-08	276	298	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f+r G C+ Gd+C F+Hg TRIDC2AG025720.2 276 VPCPNFRRPGGCPSGDNCEFSHG 298 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence
MGDLPDLDRA QAAGAGRRDR LAALLELAAA DDVDGMKAAL EGAGEEAAEL ADDVGLWYGR 60 SKAYEPRTPL MVAATYGSAR VVSLLLGRAG WVDVARRPGG DGFTPLHCAA SGGSCDAVQV 120 VKMLLDAGAD PATADSTGRV PADVVRAPPA SADALGDLEI LLGRRRALAV ATSAASGASS 180 PPLSSSPDDE GNRSPSSRSS SLSPITVDRA KKEYPVDPTL PDIKSSVYAS DEFRMFAFKV 240 RPCSRAYSHD WTECPFVHPG ENARRRDPRK HPYTAVPCPN FRRPGGCPSG DNCEFSHGVF 300 ESWLHPTQYR TRLCKEGAAC ARRICFFAHD EDELRYVPHN SGAGLLSPRA TSSIDMTAAA 360 ALGLLPGSPR HFVPPPGSPS AVNNGGAASA HWLQGSRLRS SFNARDATVE DLGLLLDWES 420 QYLGALCLPP SSRPQPRLST GLSIRPTAIA PTSLEDMYAS QMAMSPRFTN DQGHSAYSPA 480 HKSAILNKLH QQKGLLSPVN TNRMYSPRAL DPAALVHSPI GGMSPRSPRL MEPTSPMSAR 540 FGATVPQREM YEQFSNLNKH QLPSVGSPRN SNAASWGNVG SSPMGKVDWG VDGEELDRLR 600 CPDQPGFAEK EPDAPWGRSL NSNRGEMQLG MSGGMASGSA NRPDWNNQAD LLDQMAIGAW 660 LEQLQTDQK

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence

MGDLPDLDRA QAAGAGRRDR LAALLELAAA DDVDGMKAAL EGAGEEAAEL ADDVGLWYGR  60
SKAYEPRTPL MVAATYGSAR VVSLLLGRAG WVDVARRPGG DGFTPLHCAA SGGSCDAVQV  120
VKMLLDAGAD PATADSTGRV PADVVRAPPA SADALGDLEI LLGRRRALAV ATSAASGASS  180
PPLSSSPDDE GNRSPSSRSS SLSPITVDRA KKEYPVDPTL PDIKSSVYAS DEFRMFAFKV  240
RPCSRAYSHD WTECPFVHPG ENARRRDPRK HPYTAVPCPN FRRPGGCPSG DNCEFSHGVF  300
ESWLHPTQYR TRLCKEGAAC ARRICFFAHD EDELRYVPHN SGAGLLSPRA TSSIDMTAAA  360
ALGLLPGSPR HFVPPPGSPS AVNNGGAASA HWLQGSRLRS SFNARDATVE DLGLLLDWES  420
QYLGALCLPP SSRPQPRLST GLSIRPTAIA PTSLEDMYAS QMAMSPRFTN DQGHSAYSPA  480
HKSAILNKLH QQKGLLSPVN TNRMYSPRAL DPAALVHSPI GGMSPRSPRL MEPTSPMSAR  540
FGATVPQREM YEQFSNLNKH QLPSVGSPRN SNAASWGNVG SSPMGKVDWG VDGEELDRLR  600
CPDQPGFAEK EPDAPWGRSL NSNRGEMQLG MSGGMASGSA NRPDWNNQAD LLDQMAIGAW  660
LEQLQTDQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-137	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC2AG025720.2