PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1BG074670.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 810aa MW: 87772.1 Da PI: 3.9811 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.3 | 6.3e-09 | 748 | 770 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+ ++ GtC yG++C+F+H+p TRIDC1BG074670.4 748 NCPSYMSKGTCTYGPSCHFNHPP 770 7********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 810 aa Download sequence |
ASLLRHHQDH DQEQDQAAPA HAPRAKRALH LLPQTPTTSP SLAPSAAAAA HAHGLGFSTQ 60 DQDGYDAVAV EGQEVLEQGG VVAAGIIGQG TQDATAVAVA VALDDDDQEK KPLGQCTSTT 120 SSYCEELRTT TMETDVAKDD QEAVEQGVIV EQEGAPMDDA IAVDDDDQEE KPLEQSSTTY 180 GDLGTAMEND AAAAAVQVQE QVVEQQDATQ PRDEDTAAEG QETPGAHQPG STENADDAVQ 240 VQEEGETADA TAVHDHDKAV EQCTTADDLG TTMENDVAKD DQEVLEQGVI DQGDASTIDA 300 VKDHEVLLLG AVEGTRATTD GIAAVEDQGK NVEQCTTYSD LGTTMKNDDA VDDKQVVKQG 360 AVDLTMDDDA SVEEQEVVEQ GVVDLTMDDD ASVEEQEVVE EGVVDLTMDD DASVEEQEVV 420 EEGVVDLTMD DDDSVKHHKQ QGIIDGTDDI AVEKQEKVLE QCSRATTDQY TVREKEMVVE 480 QGVIDPKYMD LATEDQVKLS IIDDHGTVPM DNIVVKDQDK AVVQYASDAI VTIKDESPVE 540 EHDTVGNQGV IDKNGRTKDD IDVEGHGYVN EQVIVDNWGT SSDATALEGQ KNEAEPRIGD 600 EQIAGKDMDG VHAEGNMLEQ RTSDKQGATQ SDFTVDKHKD VAECVRHEWG APEDDLAMDR 660 TAYQGTRDWG IVNKEKVKLP ADDRAMDTAA YQGTGDWGIV NKDKVKLPED DRAMDTAAYQ 720 GTGDWGIVSK EKYTLPARRY PQKPRKLNCP SYMSKGTCTY GPSCHFNHPP QLKSRSDESW 780 RPSERRNHGA AEILELNRLG LPIREGSKKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 3e-07 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1BG074670.4 |