PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG067240.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 612aa MW: 67413.9 Da PI: 7.8061

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG067240.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	78.7	6e-25	143	244	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + TRIDC1BG067240.4 143 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RG 232 99**************************963.3445679********************************************..34 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+++v+r+ TRIDC1BG067240.4 233 DDGELRLGVRRA 244 89999*9996 PP
2	Auxin_resp	112	5.9e-37	269	349	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +aha++tks+F+++YnPr s+seF+v+++k+ k++++++s+G Rfkm++e+ed++err++G+++g+ d+dp W++SkW++L TRIDC1BG067240.4 269 VAHAVATKSMFQIFYNPRLSQSEFIVPYWKFAKSFSQPFSAGLRFKMRYESEDAAERRYTGIITGTGDADP-MWRGSKWKCL 349 79*******************************************************************.9******9 PP

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence
MAGIDLNTVE EDEEESSAEL LLAGSAPPPP RPSAVCLELW HACAGPVAPM PRKGGVVVYL 60 PQGHLDHLGD APAHAAPSPA AVPPHVFCRV VDVTLHADAS TDEVYAQLSL LPENEVRACR 120 HDGSGGEDGE TVKQRFARMP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP PLDYSQQRPS 180 QELVAKDLHG TEWKFRHIYR GQPRRHLLTT GWSAFVNKKK LVSGDAVLFL RGDDGELRLG 240 VRRAVQLKNG SAFPALYSQC SNLGTLANVA HAVATKSMFQ IFYNPRLSQS EFIVPYWKFA 300 KSFSQPFSAG LRFKMRYESE DAAERRYTGI ITGTGDADPM WRGSKWKCLL VRWDDDGEFR 360 RPNRVSPWEI ELTSSASGSH LAAPTSKRMK PYLPHANPDF TVPHGGGRPD FAESAQLRKV 420 LQGQELLGYR THDGTAVATS QPCEARNLQY IDERGCSNNG SNNVLGGIPS HGVRTPLGIP 480 YHCSGFGESQ RFQKVLQGQE VFRPYRGSLV DARMRNGGFQ QQDGPYASAL LDKWRAQQQH 540 AFGFGPPAPV LPSQPSLSPP SVLMFQLDTD PKVSRFEFGH GHLDKNVDDP YARFVSAEGI 600 GRGEQMLSLR PH

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence

MAGIDLNTVE EDEEESSAEL LLAGSAPPPP RPSAVCLELW HACAGPVAPM PRKGGVVVYL  60
PQGHLDHLGD APAHAAPSPA AVPPHVFCRV VDVTLHADAS TDEVYAQLSL LPENEVRACR  120
HDGSGGEDGE TVKQRFARMP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP PLDYSQQRPS  180
QELVAKDLHG TEWKFRHIYR GQPRRHLLTT GWSAFVNKKK LVSGDAVLFL RGDDGELRLG  240
VRRAVQLKNG SAFPALYSQC SNLGTLANVA HAVATKSMFQ IFYNPRLSQS EFIVPYWKFA  300
KSFSQPFSAG LRFKMRYESE DAAERRYTGI ITGTGDADPM WRGSKWKCLL VRWDDDGEFR  360
RPNRVSPWEI ELTSSASGSH LAAPTSKRMK PYLPHANPDF TVPHGGGRPD FAESAQLRKV  420
LQGQELLGYR THDGTAVATS QPCEARNLQY IDERGCSNNG SNNVLGGIPS HGVRTPLGIP  480
YHCSGFGESQ RFQKVLQGQE VFRPYRGSLV DARMRNGGFQ QQDGPYASAL LDKWRAQQQH  540
AFGFGPPAPV LPSQPSLSPP SVLMFQLDTD PKVSRFEFGH GHLDKNVDDP YARFVSAEGI  600
GRGEQMLSLR PH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-159	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG067240.4