PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG067240.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 625aa MW: 69003.8 Da PI: 9.2942

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG067240.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	78.7	6.2e-25	157	258	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + TRIDC1BG067240.3 157 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RG 246 99**************************963.3445679********************************************..34 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+++v+r+ TRIDC1BG067240.3 247 DDGELRLGVRRA 258 89999*9996 PP
2	Auxin_resp	111.9	6.1e-37	283	363	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +aha++tks+F+++YnPr s+seF+v+++k+ k++++++s+G Rfkm++e+ed++err++G+++g+ d+dp W++SkW++L TRIDC1BG067240.3 283 VAHAVATKSMFQIFYNPRLSQSEFIVPYWKFAKSFSQPFSAGLRFKMRYESEDAAERRYTGIITGTGDADP-MWRGSKWKCL 363 79*******************************************************************.9******9 PP

Sequence ? help Back to Top
Protein Sequence Length: 625 aa Download sequence
WRGSTSTPWR RTRRSPPRSC CSRGAGSSSV ATPPPPPPPR PSAVCLELWH ACAGPVAPMP 60 RKGGVVVYLP QGHLDHLGDA PAHAAPSPAA VPPHVFCRVV DVTLHADAST DEVYAQLSLL 120 PENEEVVRRM REATEDGSGG EDGETVKQRF ARMPHMFCKT LTASDTSTHG GFSVPRRAAE 180 DCFPPLDYSQ QRPSQELVAK DLHGTEWKFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA 240 VLFLRGDDGE LRLGVRRAVQ LKNGSAFPAL YSQCSNLGTL ANVAHAVATK SMFQIFYNPR 300 LSQSEFIVPY WKFAKSFSQP FSAGLRFKMR YESEDAAERR YTGIITGTGD ADPMWRGSKW 360 KCLLVRWDDD GEFRRPNRVS PWEIELTSSA SGSHLAAPTS KRMKPYLPHA NPDFTVPHGG 420 GRPDFAESAQ LRKVLQGQEL LGYRTHDGTA VATSQPCEAR NLQYIDERGC SNNGSNNVLG 480 GIPSHGVRTP LGIPYHCSGF GESQRFQKVL QGQEVFRPYR GSLVDARMRN GGFQQQDGPY 540 ASALLDKWRA QQQHAFGFGP PAPVLPSQPS LSPPSVLMFQ LDTDPKVSRF EFGHGHLDKN 600 VDDPYARFVS AEGIGRGEQM LSLRP

Sequence ? help Back to Top

Protein Sequence Length: 625 aa Download sequence

WRGSTSTPWR RTRRSPPRSC CSRGAGSSSV ATPPPPPPPR PSAVCLELWH ACAGPVAPMP  60
RKGGVVVYLP QGHLDHLGDA PAHAAPSPAA VPPHVFCRVV DVTLHADAST DEVYAQLSLL  120
PENEEVVRRM REATEDGSGG EDGETVKQRF ARMPHMFCKT LTASDTSTHG GFSVPRRAAE  180
DCFPPLDYSQ QRPSQELVAK DLHGTEWKFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA  240
VLFLRGDDGE LRLGVRRAVQ LKNGSAFPAL YSQCSNLGTL ANVAHAVATK SMFQIFYNPR  300
LSQSEFIVPY WKFAKSFSQP FSAGLRFKMR YESEDAAERR YTGIITGTGD ADPMWRGSKW  360
KCLLVRWDDD GEFRRPNRVS PWEIELTSSA SGSHLAAPTS KRMKPYLPHA NPDFTVPHGG  420
GRPDFAESAQ LRKVLQGQEL LGYRTHDGTA VATSQPCEAR NLQYIDERGC SNNGSNNVLG  480
GIPSHGVRTP LGIPYHCSGF GESQRFQKVL QGQEVFRPYR GSLVDARMRN GGFQQQDGPY  540
ASALLDKWRA QQQHAFGFGP PAPVLPSQPS LSPPSVLMFQ LDTDPKVSRF EFGHGHLDKN  600
VDDPYARFVS AEGIGRGEQM LSLRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-159	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG067240.3