PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG067240.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 618aa MW: 67945.5 Da PI: 8.8139

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG067240.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	78.7	6e-25	150	251	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + TRIDC1BG067240.2 150 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RG 239 99**************************963.3445679********************************************..34 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+++v+r+ TRIDC1BG067240.2 240 DDGELRLGVRRA 251 89999*9996 PP
2	Auxin_resp	101.1	1.5e-33	276	360	1	82
Auxin_resp 1 aahaastksvFevvYnP....rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +aha++tks+F+++YnP + s+seF+v+++k+ k++++++s+G Rfkm++e+ed++err++G+++g+ d+dp W++SkW++L TRIDC1BG067240.2 276 VAHAVATKSMFQIFYNPsckyWLSQSEFIVPYWKFAKSFSQPFSAGLRFKMRYESEDAAERRYTGIITGTGDADP-MWRGSKWKCL 360 79*************5555579***********************************************.9******9 PP

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence
GGDRPQHRGG GRGGVLRGGS SSVATPPPPP PPRPSAVCLE LWHACAGPVA PMPRKGGVVV 60 YLPQGHLDHL GDAPAHAAPS PAAVPPHVFC RVVDVTLHAD ASTDEVYAQL SLLPENEEVV 120 RRMREATEDG SGGEDGETVK QRFARMPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD 180 YSQQRPSQEL VAKDLHGTEW KFRHIYRGQP RRHLLTTGWS AFVNKKKLVS GDAVLFLRGD 240 DGELRLGVRR AVQLKNGSAF PALYSQCSNL GTLANVAHAV ATKSMFQIFY NPSCKYWLSQ 300 SEFIVPYWKF AKSFSQPFSA GLRFKMRYES EDAAERRYTG IITGTGDADP MWRGSKWKCL 360 LVRWDDDGEF RRPNRVSPWE IELTSSASGS HLAAPTSKRM KPYLPHANPD FTVPHGGGRP 420 DFAESAQLRK VLQGQELLGY RTHDGTAVAT SQPCEARNLQ YIDERGCSNN GSNNVLGGIP 480 SHGVRTPLGI PYHCSGFGES QRFQKVLQGQ EVFRPYRGSL VDARMRNGGF QQQDGPYASA 540 LLDKWRAQQQ HAFGFGPPAP VLPSQPSLSP PSVLMFQLDT DPKVSRFEFG HGHLDKNVDD 600 PYARFVSAEG IGRGEQML

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence

GGDRPQHRGG GRGGVLRGGS SSVATPPPPP PPRPSAVCLE LWHACAGPVA PMPRKGGVVV  60
YLPQGHLDHL GDAPAHAAPS PAAVPPHVFC RVVDVTLHAD ASTDEVYAQL SLLPENEEVV  120
RRMREATEDG SGGEDGETVK QRFARMPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD  180
YSQQRPSQEL VAKDLHGTEW KFRHIYRGQP RRHLLTTGWS AFVNKKKLVS GDAVLFLRGD  240
DGELRLGVRR AVQLKNGSAF PALYSQCSNL GTLANVAHAV ATKSMFQIFY NPSCKYWLSQ  300
SEFIVPYWKF AKSFSQPFSA GLRFKMRYES EDAAERRYTG IITGTGDADP MWRGSKWKCL  360
LVRWDDDGEF RRPNRVSPWE IELTSSASGS HLAAPTSKRM KPYLPHANPD FTVPHGGGRP  420
DFAESAQLRK VLQGQELLGY RTHDGTAVAT SQPCEARNLQ YIDERGCSNN GSNNVLGGIP  480
SHGVRTPLGI PYHCSGFGES QRFQKVLQGQ EVFRPYRGSL VDARMRNGGF QQQDGPYASA  540
LLDKWRAQQQ HAFGFGPPAP VLPSQPSLSP PSVLMFQLDT DPKVSRFEFG HGHLDKNVDD  600
PYARFVSAEG IGRGEQML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-157	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG067240.2