PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1BG056400.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 236aa MW: 26762.1 Da PI: 9.5429 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 80.5 | 1.7e-25 | 33 | 134 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ +++ + s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F + TRIDC1BG056400.6 33 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyKQV-RPSQELVAKDLDGTQWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RG 122 99****************************97444.34579************************************************..34 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+++v+r+ TRIDC1BG056400.6 123 DDGELRLGVRRA 134 89999****996 PP | |||||||
2 | Auxin_resp | 94.6 | 1.5e-31 | 159 | 236 | 1 | 79 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkW 79 +a++++++ +F+v++ Pr+++seF+v++++++k+l++++s+GmRfk + e++d++er+ +G+++g+s++dp+rWp+SkW TRIDC1BG056400.6 159 VASSLENRRIFHVCFDPRSGASEFIVPYWRFSKSLNHPFSIGMRFKDSNESDDANERS-TGLISGISEVDPIRWPGSKW 236 578899***************************************************9.9******************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence |
MFRQNVRESA PEEGEDEMAG GDGEKKPRML HMFCKTLTAS DTSTHGGFSV PRRAAEDCFA 60 PLDYKQVRPS QELVAKDLDG TQWRFRHIYR GQPRRHLLTT GWSSFVNKKK LVSGDAVLFL 120 RGDDGELRLG VRRAVQLRNE ALFKAVNSNE SKLHTLSAVA SSLENRRIFH VCFDPRSGAS 180 EFIVPYWRFS KSLNHPFSIG MRFKDSNESD DANERSTGLI SGISEVDPIR WPGSKW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 3e-97 | ARF family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1BG056400.6 |