PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC1BG056400.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 233aa MW: 26664 Da PI: 9.1521 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 80.6 | 1.6e-25 | 42 | 143 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ +++ + s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F + TRIDC1BG056400.5 42 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyKQV-RPSQELVAKDLDGTQWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RG 131 99****************************97444.34579************************************************..34 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+++v+r+ TRIDC1BG056400.5 132 DDGELRLGVRRA 143 89999****996 PP | |||||||
2 | Auxin_resp | 64.2 | 4.9e-22 | 168 | 226 | 1 | 59 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl 59 +a++++++ +F+v++ Pr+++seF+v++++++k+l++++s+GmRfk + e++d++er++ TRIDC1BG056400.5 168 VASSLENRRIFHVCFDPRSGASEFIVPYWRFSKSLNHPFSIGMRFKDSNESDDANERSV 226 578899***************************************************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence |
RLALVADAEM FRQNVRESAP EEGEDEMAGG DGEKKPRMLH MFCKTLTASD TSTHGGFSVP 60 RRAAEDCFAP LDYKQVRPSQ ELVAKDLDGT QWRFRHIYRG QPRRHLLTTG WSSFVNKKKL 120 VSGDAVLFLR GDDGELRLGV RRAVQLRNEA LFKAVNSNES KLHTLSAVAS SLENRRIFHV 180 CFDPRSGASE FIVPYWRFSK SLNHPFSIGM RFKDSNESDD ANERSVYWID FRY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-84 | ARF family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC1BG056400.5 |