PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1BG056400.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 256aa MW: 28864.4 Da PI: 8.4867 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 80.3 | 2e-25 | 52 | 153 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ +++ + s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F + TRIDC1BG056400.4 52 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyKQV-RPSQELVAKDLDGTQWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RG 141 99****************************97444.34579************************************************..34 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+++v+r+ TRIDC1BG056400.4 142 DDGELRLGVRRA 153 89999****996 PP | |||||||
2 | Auxin_resp | 97.5 | 1.9e-32 | 178 | 256 | 1 | 80 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWr 80 +a++++++ +F+v++ Pr+++seF+v++++++k+l++++s+GmRfk + e++d++er+ +G+++g+s++dp+rWp+SkWr TRIDC1BG056400.4 178 VASSLENRRIFHVCFDPRSGASEFIVPYWRFSKSLNHPFSIGMRFKDSNESDDANERS-TGLISGISEVDPIRWPGSKWR 256 578899***************************************************9.9*******************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence |
ADAATDEVYA RLALVADAEM FRQNVRESAP EEGEDEMAGG DGEKKPRMLH MFCKTLTASD 60 TSTHGGFSVP RRAAEDCFAP LDYKQVRPSQ ELVAKDLDGT QWRFRHIYRG QPRRHLLTTG 120 WSSFVNKKKL VSGDAVLFLR GDDGELRLGV RRAVQLRNEA LFKAVNSNES KLHTLSAVAS 180 SLENRRIFHV CFDPRSGASE FIVPYWRFSK SLNHPFSIGM RFKDSNESDD ANERSTGLIS 240 GISEVDPIRW PGSKWR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-104 | ARF family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1BG056400.4 |