PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG056400.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 563aa MW: 61317.4 Da PI: 8.8085

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG056400.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	78.2	8.8e-25	33	134	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ +++ + s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F + TRIDC1BG056400.3 33 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyKQV-RPSQELVAKDLDGTQWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RG 122 99**************************97444.34579********************************************..34 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+++v+r+ TRIDC1BG056400.3 123 DDGELRLGVRRA 134 89999*9996 PP
2	Auxin_resp	102.6	5.1e-34	159	240	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 +a++++++ +F+v++ Pr+++seF+v++++++k+l++++s+GmRfk + e++d++er+ +G+++g+s++dp+rWp+SkWr+L+ TRIDC1BG056400.3 159 VASSLENRRIFHVCFDPRSGASEFIVPYWRFSKSLNHPFSIGMRFKDSNESDDANERS-TGLISGISEVDPIRWPGSKWRCLQ 240 578899*************************************************9.9********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MFRQNVRESA PEEGEDEMAG GDGEKKPRML HMFCKTLTAS DTSTHGGFSV PRRAAEDCFA 60 PLDYKQVRPS QELVAKDLDG TQWRFRHIYR GQPRRHLLTT GWSSFVNKKK LVSGDAVLFL 120 RGDDGELRLG VRRAVQLRNE ALFKAVNSNE SKLHTLSAVA SSLENRRIFH VCFDPRSGAS 180 EFIVPYWRFS KSLNHPFSIG MRFKDSNESD DANERSTGLI SGISEVDPIR WPGSKWRCLQ 240 VRWDDGNHCN HQRRVSPWEI ERVGGSVQVT DCLSASSSKR AKLYFPQGNL DAPVTDGNGF 300 PDSVETGSFH RVLQGQELLM GSRTRGAARS QSPDVAKFRA PDHQRFSANA RSYIPQQSPA 360 EFPYHSSGFG EPLGFPEVLQ GQEMSLALRF YSQGSAFDAH AQHGGVGPFG YAQRSAAPGG 420 LSPAAQGYAL GQFTAAAAKV SSPSSVLMFN QATVPQFDLE ARTGSYRGAY AGQCPPGMEM 480 AREAEEAWPC AQRRTPSVTG TGCRRFEEWI KASTPASAAG GRSGSAVAGD VVGRSSCRLF 540 GFSLTDQKVL GGAGEGGAKE GGA

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MFRQNVRESA PEEGEDEMAG GDGEKKPRML HMFCKTLTAS DTSTHGGFSV PRRAAEDCFA  60
PLDYKQVRPS QELVAKDLDG TQWRFRHIYR GQPRRHLLTT GWSSFVNKKK LVSGDAVLFL  120
RGDDGELRLG VRRAVQLRNE ALFKAVNSNE SKLHTLSAVA SSLENRRIFH VCFDPRSGAS  180
EFIVPYWRFS KSLNHPFSIG MRFKDSNESD DANERSTGLI SGISEVDPIR WPGSKWRCLQ  240
VRWDDGNHCN HQRRVSPWEI ERVGGSVQVT DCLSASSSKR AKLYFPQGNL DAPVTDGNGF  300
PDSVETGSFH RVLQGQELLM GSRTRGAARS QSPDVAKFRA PDHQRFSANA RSYIPQQSPA  360
EFPYHSSGFG EPLGFPEVLQ GQEMSLALRF YSQGSAFDAH AQHGGVGPFG YAQRSAAPGG  420
LSPAAQGYAL GQFTAAAAKV SSPSSVLMFN QATVPQFDLE ARTGSYRGAY AGQCPPGMEM  480
AREAEEAWPC AQRRTPSVTG TGCRRFEEWI KASTPASAAG GRSGSAVAGD VVGRSSCRLF  540
GFSLTDQKVL GGAGEGGAKE GGA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-119	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG056400.3