PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG052310.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YC

Protein Properties

Length: 283aa MW: 31595.3 Da PI: 5.2888

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG052310.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	57.6	2.8e-18	8	84	20	96
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ++ + rikki++adedv +i+ +Pvl+ska elf+ +l r+++ + e+ +t+ s +++++ + d++dfl ++ TRIDC1BG052310.4 8 TFQMPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYNITVEKGVKTVSSSHLKQCIHSYDVYDFLKNVS 84 57789********************************************************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
SKWQIPTTFQ MPRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YNITVEKGVK 60 TVSSSHLKQC IHSYDVYDFL KNVSSKVPDL GAPDSSVDDK LGKRRKHGED ESEEESKRTR 120 NEAACHTSNG RGRGRGRGRG RRAGRGAERE IEHHELGCAQ FSKPGHLKVE IGDVVLDTSE 180 TKEHTPLSNA RASLRNIDLN LDLADYEEDT VAPQVQPSAP VVTVAPQVQT SGPSVSQLKE 240 EVETKDFLGW QMPEMNKMAM DPVQFALSSN HRLEEDEDYD NEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	140	RGRGRGRGRG
2	131	141	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-43	NF-YC family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG052310.4