PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG052310.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YC

Protein Properties

Length: 266aa MW: 29510.7 Da PI: 4.8616

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG052310.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	41.6	2.7e-13	1	67	30	96
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ++adedv +i+ +Pvl+ska elf+ +l r+++ + e+ +t+ s +++++ + d++dfl ++ TRIDC1BG052310.2 1 MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYNITVEKGVKTVSSSHLKQCIHSYDVYDFLKNVS 67 899************************************************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MQADEDVGKI ALAVPVLVSK ALELFLQDLC DRTYNITVEK GVKTVSSSHL KQCIHSYDVY 60 DFLKNVSSKV PDLGAPDSSV DDKLGKRRKH GEDESEEESK RTRNEAACHT SNGRGRGRGR 120 GRGRRAGRGA EREIEHHELG CAQFSKPGHL KVEIGDVVLD TSETKEHTPL SNARASLRNI 180 DLNLDLADYE EDTVAPQVQP SAPVVTVAPQ VQTSGPSVSQ LKEEVETKDF LGWQMPEMNK 240 MAMDPVQFAL SSNHRLEEDE DYDNEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	123	RGRGRGRGRG
2	114	124	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	6e-39	NF-YC family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG052310.2