PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1BG010030.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 244aa MW: 27647.1 Da PI: 8.4319 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.5 | 1.1e-15 | 1 | 47 | 4 | 55 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g TRIDC1BG010030.3 1 RGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 47 8*****************......55************************997 PP | |||||||
2 | AP2 | 41.8 | 2.7e-13 | 90 | 140 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+ + eAa+a+++a+ k +g TRIDC1BG010030.3 90 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 140 89********.7******5553..2.26**********99**********99776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence |
RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVDA DINFNLSDYE 60 DDMKQMKGLS KEEFVHVLRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL 120 FDNEVEAARA YDKAAIKCNG REAVTNFEPS TYDAELLSEV AAEGADVDLN LSISQPTSQS 180 PKRDKSSLGL QLHHGSYEGS ELKRPKVDAP PEMVAIPHRY PLLTEHPPIW HGQSYPIFLN 240 NEVR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 2e-98 | AP2 family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1BG010030.3 |