PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG010030.12

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

AP2

Protein Properties

Length: 406aa MW: 44478.6 Da PI: 7.1111

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG010030.12	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.8	4.8e-17	188	237	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g TRIDC1BG010030.12 188 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 237 78*****************......55**********************997 PP
2	AP2	40.7	5.9e-13	280	330	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+ + eAa+a+++a+ k +g TRIDC1BG010030.12 280 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 330 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
VISAMELDLN VEEKPAAVAR SDSGTSESSV LNAEASCGGG AAPAEEASSS TRQPAPAPRA 60 VLEFSILRSS ASAEGENDVG ADDDEEEATP SPLPPPPRHY HQHLLQPQQL VTQELFPAAA 120 TAGGPPPMSV PQHWAELGFF RPAAPPPDMR ILQMQQQQLQ VHAQPPPPPA AQPPVAKKSR 180 RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVDA 240 DINFNLSDYE DDMKQMKGLS KEEFVHVLRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQF 300 LGKKYIYLGL FDNEVEAARA YDKAAIKCNG REAVTNFEPS TYDAELLSEV AAEGADVDLN 360 LSISQPTSQS PKRDKSSLGL QLHHGSYEGS ELKRPKASTN AFFKRF

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

VISAMELDLN VEEKPAAVAR SDSGTSESSV LNAEASCGGG AAPAEEASSS TRQPAPAPRA  60
VLEFSILRSS ASAEGENDVG ADDDEEEATP SPLPPPPRHY HQHLLQPQQL VTQELFPAAA  120
TAGGPPPMSV PQHWAELGFF RPAAPPPDMR ILQMQQQQLQ VHAQPPPPPA AQPPVAKKSR  180
RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVDA  240
DINFNLSDYE DDMKQMKGLS KEEFVHVLRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQF  300
LGKKYIYLGL FDNEVEAARA YDKAAIKCNG REAVTNFEPS TYDAELLSEV AAEGADVDLN  360
LSISQPTSQS PKRDKSSLGL QLHHGSYEGS ELKRPKASTN AFFKRF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	8e-99	AP2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG010030.12