PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1AG058290.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 729aa    MW: 79721.3 Da    PI: 7.6357
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1AG058290.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.47.8e-25173274199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + 
  TRIDC1AG058290.2 173 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RG 262
                       99****************************963.3445679************************************************..34 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       +++el+++v+r+
  TRIDC1AG058290.2 263 DDGELRLGVRRA 274
                       89999***9996 PP
2Auxin_resp113.61.8e-37299379182
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                       +aha++tks+F+++YnPr s+seF+v+++k+ k++++++svG+Rfkm++e+ed++err++G+++g+ d+dp  W++SkW++L
  TRIDC1AG058290.2 299 VAHAVATKSMFQIFYNPRLSQSEFIVPYWKFTKSFSQPFSVGSRFKMRYESEDAAERRYTGIITGTGDADP-MWRGSKWKCL 379
                       79*********************************************************************.9********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    
MAGIDLNTVE EDEEEPSAEV LLARSGGGGD CSSQSHSHSH SHSGHGQGSS SVAAATPPRP  60
SAVCLELWHA CAGPVAPMPR KGGVVVYLPQ GHLDHLGDAP APSPAAVPPH VFCRVVDVTL  120
HADASTDEVY AQLSLLPENE EVVRRMREAT EDGSGGEDGE TVKQRFARMP HMFCKTLTAS  180
DTSTHGGFSV PRRAAEDCFP PLDYSQQRPS QELVAKDLHG TEWKFRHIYR GQPRRHLLTT  240
GWSAFVNKKK LVSGDAVLFL RGDDGELRLG VRRAVQLKNG SAFPALYSQC SNLGTLANVA  300
HAVATKSMFQ IFYNPRLSQS EFIVPYWKFT KSFSQPFSVG SRFKMRYESE DAAERRYTGI  360
ITGTGDADPM WRGSKWKCLL VRWDDDGEFR RPNRVSPWEI ELTSSASGSH LAAPTSKRMK  420
PYLPHANPEF TVPHGGGRPD FAESAQLRKV LQGQELLGYR THDGTAVATS QPCEARNLQY  480
IDERGCSNNG SNNVLGGVPS HGVKTPLGIP YHCSGFGESQ RFQKVLQGQE VFRPYRGSLV  540
DARMRSGGFH QQDGPYASAL LDKWRTQQQH AFGFGSSAPV LPSQPSLSPP SVLMFQQADP  600
KVSRFEFGQG HLDKNMDDPY ARFVSAEAIG RGEQTLSLRP HLGSEVIDTR VAVENKGVAP  660
TNSCKIFGIS LAEKVRARDE MGCDDGGANY PSSTQPLKQQ VPKSLGNSCA TVHEQRPVVG  720
RAIDVQQWI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-158ARF family protein