PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1AG058290.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 608aa    MW: 66870.5 Da    PI: 10.9513
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1AG058290.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.75.9e-25139240199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + 
  TRIDC1AG058290.1 139 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RG 228
                       99****************************963.3445679************************************************..34 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       +++el+++v+r+
  TRIDC1AG058290.1 229 DDGELRLGVRRA 240
                       89999***9996 PP
2Auxin_resp1141.4e-37265345182
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                       +aha++tks+F+++YnPr s+seF+v+++k+ k++++++svG+Rfkm++e+ed++err++G+++g+ d+dp  W++SkW++L
  TRIDC1AG058290.1 265 VAHAVATKSMFQIFYNPRLSQSEFIVPYWKFTKSFSQPFSVGSRFKMRYESEDAAERRYTGIITGTGDADP-MWRGSKWKCL 345
                       79*********************************************************************.9********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    
GGDRPQHGGG GRGGALGGGA LLRGGRDPAA AQRGVPRAVA RLRGARGPHA AQGGCRRLPP  60
AGPPRPPRRR ARTFTRRRAA PRLLPRRRRH APCGRVHGRG VRAALAAPRE RGACATEDGS  120
GGEDGETVKQ RFARMPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQQRPSQELV  180
AKDLHGTEWK FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GELRLGVRRA  240
VQLKNGSAFP ALYSQCSNLG TLANVAHAVA TKSMFQIFYN PRLSQSEFIV PYWKFTKSFS  300
QPFSVGSRFK MRYESEDAAE RRYTGIITGT GDADPMWRGS KWKCLLVRWD DDGEFRRPNR  360
VSPWEIELTS SASGSHLAAP TSKRMKPYLP HANPEFTVPH GGGRPDFAES AQLRKVLQGQ  420
ELLGYRTHDG TAVATSQPCE ARNLQYIDER GCSNNGSNNV LGGVPSHGVK TPLGIPYHCS  480
GFGESQRFQK VLQGQEVFRP YRGSLVDARM RSGGFHQQDG PYASALLDKW RTQQQHAFGF  540
GSSAPVLPSQ PSLSPPSVLM FQQADPKVSR FEFGQGHLDK NMDDPYARFV SAEAIGRGEQ  600
TLSLRPHL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16773PRRRART
26889RRRARTFTRRRAAPRLLPRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-121ARF family protein