PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG049700.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 627aa MW: 68068 Da PI: 7.5624

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG049700.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	78.5	7e-25	58	159	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ +++ + s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F + TRIDC1AG049700.1 58 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyKQV-RPSQELVAKDLHGTQWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RG 147 99**************************97444.34579********************************************..34 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+++v+r+ TRIDC1AG049700.1 148 DDGELRLGVRRA 159 89999*9996 PP
2	Auxin_resp	102.2	6.8e-34	184	265	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 +a++++++s+F+v++ Pr+++seF+v++++++k+l++++s+GmRf+ + e++d++er+ +G+++g+s++dp+rWp+SkWr+L+ TRIDC1AG049700.1 184 VASSLENRSIFHVCFDPRSGASEFIVPYWRFSKSLNHSFSIGMRFRDSNESDDANERS-TGLISGISEVDPIRWPGSKWRCLQ 265 578899*************************************************9.9********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence
VGVELCADAA TDEVYARLAL VADAEMFRQN VRESASEEGE DGMAGGDGEK KPRMPHMFCK 60 TLTASDTSTH GGFSVPRRAA EDCFAPLDYK QVRPSQELVA KDLHGTQWRF RHIYRGQPRR 120 HLLTTGWSSF VNKKKLVSGD AVLFLRGDDG ELRLGVRRAV QLRNEALFKA VNSNESKLHT 180 LSAVASSLEN RSIFHVCFDP RSGASEFIVP YWRFSKSLNH SFSIGMRFRD SNESDDANER 240 STGLISGISE VDPIRWPGSK WRCLQVRWDD GNHCNHQRRV SPWEIERVGG SISVTDCLSA 300 SSLKRAKLYF PQGNLDAPVT DGNGYPDSVE TGSFHRVLQG QELLMGSRAH GAARSQSPDV 360 AKFRTPDHQR FSANARSYIP QQSPVEFPYH SSGFGESLRF PEVLQGQEMS QALRFYQGTA 420 FDARAQHGGV VGPFGYAQRS AAPGGLSPAA QGYALGQFTP SAAAAAKVSS PSSVLMFNQA 480 TVPQFDLEGR ASSYRGAYGG QCPPAMEMAR ETEEAWPCAQ RRTPSVTGTG CRRFEEWIKA 540 STPASADGGR ARPAAAGDVV GRSNCRLFGF SLTDQKVLGG AGEGDAKEGD ADDVVAECAD 600 PRVLDLFGRG HPAPGALHAI VAAPLGM

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence

VGVELCADAA TDEVYARLAL VADAEMFRQN VRESASEEGE DGMAGGDGEK KPRMPHMFCK  60
TLTASDTSTH GGFSVPRRAA EDCFAPLDYK QVRPSQELVA KDLHGTQWRF RHIYRGQPRR  120
HLLTTGWSSF VNKKKLVSGD AVLFLRGDDG ELRLGVRRAV QLRNEALFKA VNSNESKLHT  180
LSAVASSLEN RSIFHVCFDP RSGASEFIVP YWRFSKSLNH SFSIGMRFRD SNESDDANER  240
STGLISGISE VDPIRWPGSK WRCLQVRWDD GNHCNHQRRV SPWEIERVGG SISVTDCLSA  300
SSLKRAKLYF PQGNLDAPVT DGNGYPDSVE TGSFHRVLQG QELLMGSRAH GAARSQSPDV  360
AKFRTPDHQR FSANARSYIP QQSPVEFPYH SSGFGESLRF PEVLQGQEMS QALRFYQGTA  420
FDARAQHGGV VGPFGYAQRS AAPGGLSPAA QGYALGQFTP SAAAAAKVSS PSSVLMFNQA  480
TVPQFDLEGR ASSYRGAYGG QCPPAMEMAR ETEEAWPCAQ RRTPSVTGTG CRRFEEWIKA  540
STPASADGGR ARPAAAGDVV GRSNCRLFGF SLTDQKVLGG AGEGDAKEGD ADDVVAECAD  600
PRVLDLFGRG HPAPGALHAI VAAPLGM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-127	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG049700.1