PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG046200.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YC

Protein Properties

Length: 276aa MW: 30618.2 Da PI: 5.2796

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG046200.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	55.2	1.6e-17	6	78	25	97
NF-YC 25 rikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 rikki++adedv +i+ +Pvl+ska elf+ +l r+++ + e+ +t+ s +++++ + d++dfl ++ TRIDC1AG046200.4 6 RIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYNITVEKGVKTVSSSHLKQCIHSYDVYDFLKNVAS 78 9*******************************************************************98765 PP

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence
FVIQPRIKKI MQADEDVGKI ALAVPVLVSK ALELFLQDLC DRTYNITVEK GVKTVSSSHL 60 KQCIHSYDVY DFLKNVASKV PDLGAPDSSV DDKLGKRRKH GEDESEEESK RTRNEAACHT 120 SNGRGRGRGR GRGRRAGRGA EREIEHHELG CAQFSKPGHL KVEIGDGVLD TSETKEHTPL 180 SNARASLRNI DLNLDLADYE EDTVAPQVQP SAPVVTVAPQ VQTSGPSVSQ LKEEVATKDF 240 LGWQMPEMNK MAMDPVQFAL SSNHRLEEDE DYDNEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	133	RGRGRGRGRG
2	124	134	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-42	NF-YC family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG046200.4