PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG018700.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 607aa MW: 67819.1 Da PI: 5.2126

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG018700.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.3	3.6e-18	41	87	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+++++ vk++G+ W+tIa+ + gR +kqc++rw+++l TRIDC1AG018700.5 41 KGPWSKEEDDIIIQMVKKYGPTKWSTIAQALS-GRIGKQCRERWHNHL 87 79****************************.***********97 PP
2	Myb_DNA-binding	54.2	3.3e-17	93	135	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ +l++a++ +G++ W+ ++ ++ gRt++ +k++w+ TRIDC1AG018700.5 93 KDAWTQEEEIRLIQAHHIYGNK-WAELSKFLP-GRTDNAIKNHWH 135 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence
LHTKDKTFNS FWLHLPECFP DRTDVQCLHR WQKVLNPELV KGPWSKEEDD IIIQMVKKYG 60 PTKWSTIAQA LSGRIGKQCR ERWHNHLNPG INKDAWTQEE EIRLIQAHHI YGNKWAELSK 120 FLPGRTDNAI KNHWHSSVKK KYESYRAEGL LAQFQGLPAA LYPTGSLNVD SSSAMMQQNS 180 DGSGLNVNQE VQDSSEFSQS ALANISSSQV EQVDEPVGCH GQIHSSDGAH DSYSSCQEAC 240 DTKANDAAST LPETRHQLSI SENDPDMHWQ QDLSVADFDL QSELWQDISY QSLTAPDSIS 300 ADSFFSPNYQ HSACSSEVAN NFEEPLYPLH TYSSSRTGTV HHQSSATSVP PSFICSGRAS 360 QIVSSELPIV PESKEQQMTS VEESLPIVPE SKEQQLTSVE ESQPLESTTM GREASPNHGK 420 SVVGQKQHSE SLCYEPPCFP SLEVPFVSCE LISSSDLPEY SPLGIRQFMR PSMSFSTPLR 480 LWSSPTRDRS PDDVLKSAAK SSVCTPSIMK KRQREPPSPI PDVRLAKKMG TEKDCGSSAM 540 PSTRTERSCR DATRDDSLDL IPENSKDIIY QGKTEDNANI NTLEKRERCS TTERDTAYNL 600 GIANQSW

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence

LHTKDKTFNS FWLHLPECFP DRTDVQCLHR WQKVLNPELV KGPWSKEEDD IIIQMVKKYG  60
PTKWSTIAQA LSGRIGKQCR ERWHNHLNPG INKDAWTQEE EIRLIQAHHI YGNKWAELSK  120
FLPGRTDNAI KNHWHSSVKK KYESYRAEGL LAQFQGLPAA LYPTGSLNVD SSSAMMQQNS  180
DGSGLNVNQE VQDSSEFSQS ALANISSSQV EQVDEPVGCH GQIHSSDGAH DSYSSCQEAC  240
DTKANDAAST LPETRHQLSI SENDPDMHWQ QDLSVADFDL QSELWQDISY QSLTAPDSIS  300
ADSFFSPNYQ HSACSSEVAN NFEEPLYPLH TYSSSRTGTV HHQSSATSVP PSFICSGRAS  360
QIVSSELPIV PESKEQQMTS VEESLPIVPE SKEQQLTSVE ESQPLESTTM GREASPNHGK  420
SVVGQKQHSE SLCYEPPCFP SLEVPFVSCE LISSSDLPEY SPLGIRQFMR PSMSFSTPLR  480
LWSSPTRDRS PDDVLKSAAK SSVCTPSIMK KRQREPPSPI PDVRLAKKMG TEKDCGSSAM  540
PSTRTERSCR DATRDDSLDL IPENSKDIIY QGKTEDNANI NTLEKRERCS TTERDTAYNL  600
GIANQSW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	5e-83	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG018700.5