PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G11510.2 | ||||||||
Common Name | AtMYB3R4, MYB3R-4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 798aa MW: 90418.8 Da PI: 6.1778 | ||||||||
Description | myb domain protein 3r-4 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.7 | 1.3e-18 | 29 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEde+l +av+ + g++Wk+Ia+++ Rt+ qc +rwqk+l AT5G11510.2 29 RGQWTAEEDEILRKAVHSFKGKNWKKIAEYFK-DRTDVQCLHRWQKVL 75 89*****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 62.9 | 6.3e-20 | 81 | 127 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde +v++++++G++ W+tIar ++ gR +kqc++rw+++l AT5G11510.2 81 KGPWTKEEDEMIVQLIEKYGPKKWSTIARFLP-GRIGKQCRERWHNHL 127 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 45.8 | 1.4e-14 | 133 | 175 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ll++a++ +G++ W+ + ++ gR+++ +k++w+ AT5G11510.2 133 KEAWTQEEELLLIRAHQIYGNR-WAELTKFLP-GRSDNGIKNHWH 175 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.294 | 24 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-15 | 26 | 81 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-15 | 28 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-16 | 29 | 75 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-23 | 30 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.08E-14 | 32 | 75 | No hit | No description |
PROSITE profile | PS51294 | 32.609 | 76 | 131 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-32 | 78 | 174 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-19 | 80 | 129 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-18 | 81 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.44E-17 | 83 | 127 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-27 | 84 | 131 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.4E-20 | 132 | 182 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.591 | 132 | 182 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-13 | 132 | 180 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-13 | 133 | 175 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.56E-10 | 135 | 175 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0032875 | Biological Process | regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0001135 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor recruiting | ||||
GO:0003713 | Molecular Function | transcription coactivator activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000014 | anatomy | rosette leaf | ||||
PO:0000026 | anatomy | primary root tip | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0003011 | anatomy | root vascular system | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020121 | anatomy | lateral root | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 798 aa Download sequence Send to blast |
MEAESSTPQE RIPKLRHGRT SGPARRSTRG QWTAEEDEIL RKAVHSFKGK NWKKIAEYFK 60 DRTDVQCLHR WQKVLNPELV KGPWTKEEDE MIVQLIEKYG PKKWSTIARF LPGRIGKQCR 120 ERWHNHLNPA INKEAWTQEE ELLLIRAHQI YGNRWAELTK FLPGRSDNGI KNHWHSSVKK 180 KLDSYMSSGL LDQYQAMPLA PYERSSTLQS TFMQSNIDGN GCLNGQAENE IDSRQNSSMV 240 GCSLSARDFQ NGTINIGHDF HPCGNSQENE QTAYHSEQFY YPELEDISVS ISEVSYDMED 300 CSQFPDHNVS TSPSQDYQFD FQELSDISLE MRHNMSEIPM PYTKESKEST LGAPNSTLNI 360 DVATYTNSAN VLTPETECCR VLFPDQESEG HSVSRSLTQE PNEFNQVDRR DPILYSSASD 420 RQISEATKSP TQSSSSRFTA TAASGKGTLR PAPLIISPDK YSKKSSGLIC HPFEVEPKCT 480 TNGNGSFICI GDPSSSTCVD EGTNNSSEED QSYHVNDPKK LVPVNDFASL AEDRPHSLPK 540 HEPNMTNEQH HEDMGASSSL GFPSFDLPVF NCDLLQSKND PLHDYSPLGI RKLLMSTMTC 600 MSPLRLWESP TGKKTLVGAQ SILRKRTRDL LTPLSEKRSD KKLEIDIAAS LAKDFSRLDV 660 MFDETENRQS NFGNSTGVIH GDRENHFHIL NGDGEEWSGK PSSLFSHRMP EETMHIRKSL 720 EKVDQICMEA NVREKDDSEQ DVENVSLFLS FNHLNISCAT GLHKLSSFRF CRQSCHFVTC 780 VKIFIVLVSF NRHCSNRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-68 | 29 | 182 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-68 | 29 | 182 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.5132 | 0.0 | flower| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT5G11510 | |||||
AtGenExpress | AT5G11510 | |||||
ATTED-II | AT5G11510 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the root quiescent center (PubMed:15937229). Accumulates in division zone of primary root tips and emerging lateral roots. Also present in floral organs in young flower buds. Weakly and uniformly present in the developing embryo and maternal tissues (PubMed:17287251). Expressed specifically in proliferating stage of leaves (PubMed:26069325). {ECO:0000269|PubMed:15937229, ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:26069325}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, cotyledons and leaves, especially in vascular tissues, and in flowers. {ECO:0000269|PubMed:17287251}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4. Functions in powdery mildew induced host endoreduplication at the site of infection. | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669, PubMed:25806785). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:25806785}.; FUNCTION: Involved in transcription regulation during induced endoreduplication at the powdery mildew (e.g. G.orontii) infection site, thus promoting G.orontii growth and reproduction. {ECO:0000269|PubMed:20018666}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00505 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G11510.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (SA) (PubMed:16463103). Expressed in a cell cycle-dependent manner, with highest levels 2 hours before the peak of mitotic index in cells synchronized by aphidicolin. Activated by CYCB1 (PubMed:17287251). Accumulates at powdery mildew (e.g. G.orontii) infected cells. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17287251}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Regulation -- ATRM (Manually Curated Target Genes) ? help Back to Top | ||||||
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Source | Target Gene (A: Activate/R: Repress) | |||||
ATRM | AT1G08560(A) |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G11510 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF371975 | 0.0 | AF371975.2 Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4 (MYB3R4) mRNA, complete cds. | |||
GenBank | AY519650 | 0.0 | AY519650.1 Arabidopsis thaliana MYB transcription factor (At5g11510) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001318541.1 | 0.0 | myb domain protein 3r-4 | ||||
Swissprot | Q94FL9 | 0.0 | MB3R4_ARATH; Transcription factor MYB3R-4 | ||||
TrEMBL | F4JXW4 | 0.0 | F4JXW4_ARATH; Myb domain protein 3r-4 | ||||
STRING | AT5G11510.1 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT5G11510.2 |
Entrez Gene | 831023 |
iHOP | AT5G11510 |
wikigenes | AT5G11510 |