PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG018700.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 741aa MW: 82195.2 Da PI: 5.5347

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG018700.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.7	3.5e-10	2	33	16	48
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 vk++G+ W+tIa+ + gR +kqc++rw+++l TRIDC1AG018700.2 2 VKKYGPTKWSTIAQALS-GRIGKQCRERWHNHL 33 9**************.***********97 PP
2	Myb_DNA-binding	53.9	4.2e-17	39	81	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ +l++a++ +G++ W+ ++ ++ gRt++ +k++w+ TRIDC1AG018700.2 39 KDAWTQEEEIRLIQAHHIYGNK-WAELSKFLP-GRTDNAIKNHWH 81 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 741 aa Download sequence
MVKKYGPTKW STIAQALSGR IGKQCRERWH NHLNPGINKD AWTQEEEIRL IQAHHIYGNK 60 WAELSKFLPG RTDNAIKNHW HSSVKKKYES YRAEGLLAQF QGLPAALYPT GSLNVDSSSA 120 MMQQNSDGSG LNVNQEVQDS SEFSQSALAN ISSSQVEQVD EPVGCHGQIH SSDGAHDSYS 180 SCQEACDTKA NDAASTLPET RHQLSISEND PDMHWQQDLS VADFDLQSEL WQDISYQSLT 240 APDSISADSF FSPNYQHSAC SSEVANNFEE PLYPLHTYSS SRTGTVHHQS SATSVPPSFI 300 CSGRASQIVS SELPIVPESK EQQMTSVEES LPIVPESKEQ QLTSVEESQP LESTTMGREA 360 SPNHGKSVVG QKQHSESLCY EPPCFPSLEV PFVSCELISS SDLPEYSPLG IRQFMRPSMS 420 FSTPLRLWSS PTRDRSPDDV LKSAAKSSVC TPSIMKKRQR EPPSPIPDVR LAKKMGTEKD 480 CGSSAMPSTR TERSCRDATR DDSLDLIPEN SKDIIYQGKT EDNANINTLE KRERCSTTER 540 DTAYNLVSAG ILTDRNGPNP ERRKLNTPTK SFSKDIISSR SKPTELLVEK SSVYINADYE 600 YVNILADTPG IKRGLESPSA WKSPLFTNFQ DGFFMSPTGT TFDALGLVKQ INEQNAPALE 660 EAHELLESGS LCNKESSDKE NIKHIVIKKE HATTNQISNV MSEARILDFN ECTTPVKKKE 720 DNRCSTLGRS PTSSYVLKNV R

Sequence ? help Back to Top

Protein Sequence Length: 741 aa Download sequence

MVKKYGPTKW STIAQALSGR IGKQCRERWH NHLNPGINKD AWTQEEEIRL IQAHHIYGNK  60
WAELSKFLPG RTDNAIKNHW HSSVKKKYES YRAEGLLAQF QGLPAALYPT GSLNVDSSSA  120
MMQQNSDGSG LNVNQEVQDS SEFSQSALAN ISSSQVEQVD EPVGCHGQIH SSDGAHDSYS  180
SCQEACDTKA NDAASTLPET RHQLSISEND PDMHWQQDLS VADFDLQSEL WQDISYQSLT  240
APDSISADSF FSPNYQHSAC SSEVANNFEE PLYPLHTYSS SRTGTVHHQS SATSVPPSFI  300
CSGRASQIVS SELPIVPESK EQQMTSVEES LPIVPESKEQ QLTSVEESQP LESTTMGREA  360
SPNHGKSVVG QKQHSESLCY EPPCFPSLEV PFVSCELISS SDLPEYSPLG IRQFMRPSMS  420
FSTPLRLWSS PTRDRSPDDV LKSAAKSSVC TPSIMKKRQR EPPSPIPDVR LAKKMGTEKD  480
CGSSAMPSTR TERSCRDATR DDSLDLIPEN SKDIIYQGKT EDNANINTLE KRERCSTTER  540
DTAYNLVSAG ILTDRNGPNP ERRKLNTPTK SFSKDIISSR SKPTELLVEK SSVYINADYE  600
YVNILADTPG IKRGLESPSA WKSPLFTNFQ DGFFMSPTGT TFDALGLVKQ INEQNAPALE  660
EAHELLESGS LCNKESSDKE NIKHIVIKKE HATTNQISNV MSEARILDFN ECTTPVKKKE  720
DNRCSTLGRS PTSSYVLKNV R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	1e-54	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG018700.2