PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG009620.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 608aa MW: 64359.8 Da PI: 8.0052

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG009620.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.9	3e-07	259	280	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+++G C+ Gd C +aHg TRIDC1AG009620.2 259 PCPEFRKGGSCRKGDGCEYAHG 280 8********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence
MCSGPRKPST PPPAAAAPKD PAAVASLLLE LAAADDVVEF RRVVEEEKAC LDAAGSWYGP 60 SAVSQGRLAA ESRTPAMVAA LYGSTAVLAH ALSVAPGEAC RASGTDGATA LHMAAAGGAA 120 NAVAATHLLL AAGASTEALS VSGLRAGDLL PRAAGVAEKP LRLLLKSPAV SPSSSPKKSA 180 SPPAAMAAAQ EPRKEYPPDL TLPDLKSGLF STDEFRMYSF KVKPCSRAYS HDWTECPFVH 240 PGENARRRDP RRYSYSCVPC PEFRKGGSCR KGDGCEYAHG VFECWLHPAQ YRTRLCKDEV 300 GCARRICFFA HRRDELRSVN PSAVSVGMMQ PVSPRSSPPN GMDMGMLNPA GWPSSPVSRL 360 KTARELDFDL EMLALDQYQQ KLFDKVSSSA HSPRASWGAP NGGLGSPHAA GSPARNMPDY 420 TDLLGSMDPA MLSQLHALSL KQAGDMSPYS SMPDTPLHMP TSPMVGANNS FGLDHSMAKA 480 IMTSRASAFA KRSQSFIDRG ARAPAARSLM SPATTIGEPS MLTDWGSPNG GNLDWGSPGG 540 KLDWGVQGDE LHKFRKSASF GFRGQSAMPA ASAATPAEPD VSWVNSLVKD GHTGDHFPQW 600 LEQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence

MCSGPRKPST PPPAAAAPKD PAAVASLLLE LAAADDVVEF RRVVEEEKAC LDAAGSWYGP  60
SAVSQGRLAA ESRTPAMVAA LYGSTAVLAH ALSVAPGEAC RASGTDGATA LHMAAAGGAA  120
NAVAATHLLL AAGASTEALS VSGLRAGDLL PRAAGVAEKP LRLLLKSPAV SPSSSPKKSA  180
SPPAAMAAAQ EPRKEYPPDL TLPDLKSGLF STDEFRMYSF KVKPCSRAYS HDWTECPFVH  240
PGENARRRDP RRYSYSCVPC PEFRKGGSCR KGDGCEYAHG VFECWLHPAQ YRTRLCKDEV  300
GCARRICFFA HRRDELRSVN PSAVSVGMMQ PVSPRSSPPN GMDMGMLNPA GWPSSPVSRL  360
KTARELDFDL EMLALDQYQQ KLFDKVSSSA HSPRASWGAP NGGLGSPHAA GSPARNMPDY  420
TDLLGSMDPA MLSQLHALSL KQAGDMSPYS SMPDTPLHMP TSPMVGANNS FGLDHSMAKA  480
IMTSRASAFA KRSQSFIDRG ARAPAARSLM SPATTIGEPS MLTDWGSPNG GNLDWGSPGG  540
KLDWGVQGDE LHKFRKSASF GFRGQSAMPA ASAATPAEPD VSWVNSLVKD GHTGDHFPQW  600
LEQEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-113	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG009620.2