PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG007920.8

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

AP2

Protein Properties

Length: 505aa MW: 54840 Da PI: 6.8753

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG007920.8	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.4e-17	181	230	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g TRIDC1AG007920.8 181 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 230 78*****************......55**********************997 PP
2	AP2	40.3	8e-13	273	323	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+ + eAa+a+++a+ k +g TRIDC1AG007920.8 273 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 323 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence
MELDLNVEEK PAAVARSDSG TSESSVLNAE ASCGGGAAPA EEASSSTRQP APAPRAVLEF 60 SILRSSASAE GENDVGADDD EEEATPSPPP PPPRHYYQHL LQPQQLVIQE LFPAAAAGGG 120 PPAMPVPQHW AELGFFRPAA PPPDMRILQL QQQAHAPPPP PPAAQPPVAK KSRRGPRSRS 180 SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VDADINFNLS 240 DYEDDMKQMK GLSKEEFVHV LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKYIY 300 LGLFDNEVEA ARAYDKAAIK CNGREAVTNF EPSTYDAELL NEVAAEGADV DLNLSISQPT 360 SQSPKRDKSS LGLQLHHGSY DGSELKRPKV DAPPEMVAIP HRYPLLTEHP PIWHGQSYPL 420 FLNNEEAARD HSRRPEVATG AVPTWAWRVS HPPPTQPMPL FSSSSSAAAS SGFSKTAAAA 480 APGAPSASFR FDPMAPSSSS SNQHH

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence

MELDLNVEEK PAAVARSDSG TSESSVLNAE ASCGGGAAPA EEASSSTRQP APAPRAVLEF  60
SILRSSASAE GENDVGADDD EEEATPSPPP PPPRHYYQHL LQPQQLVIQE LFPAAAAGGG  120
PPAMPVPQHW AELGFFRPAA PPPDMRILQL QQQAHAPPPP PPAAQPPVAK KSRRGPRSRS  180
SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VDADINFNLS  240
DYEDDMKQMK GLSKEEFVHV LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKYIY  300
LGLFDNEVEA ARAYDKAAIK CNGREAVTNF EPSTYDAELL NEVAAEGADV DLNLSISQPT  360
SQSPKRDKSS LGLQLHHGSY DGSELKRPKV DAPPEMVAIP HRYPLLTEHP PIWHGQSYPL  420
FLNNEEAARD HSRRPEVATG AVPTWAWRVS HPPPTQPMPL FSSSSSAAAS SGFSKTAAAA  480
APGAPSASFR FDPMAPSSSS SNQHH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-101	AP2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG007920.8