PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY88610.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

M-type_MADS

Protein Properties

Length: 694aa MW: 77956.7 Da PI: 9.5633

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY88610.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	51.8	1e-16	42	81	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r+ ++ kR++g++KK +ELS+LC++++++ii+s+ TEY88610.1 42 ITNDSERKASYKKRKKGLIKKVSELSTLCGVDACLIIYSP 81 89*************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence
MNLRSSAAIN MYTKRPLNLT KKKKALLNLK AMTRKKVTLA YITNDSERKA SYKKRKKGLI 60 KKVSELSTLC GVDACLIIYS PYDPVPVVWP TPVDAQNILA RFRKLSIMDQ SRKMVNQESF 120 TRQRIKKATE QLRRLQKDNT CRELEAFMFR CILGQASLHD LQFHDLSEMG WVITQTLREI 180 KARMEAMAAE HQRNQTVLPP LPPLLPPPPM LVLPTPPPPA VEEAPPRLED DGMESFPWNL 240 VQSPGGGGDM EGTGLGWDPG MVLPFPYIFG PLTGVCLKTA AWMSSTGSLR CTNFSEIALL 300 LRSSDSVVHD LFHAYDSCTD KTASRPSRFY LALWKWYPSL HDKALVGICQ RELSRSVLGF 360 STAMGSQSNN EDMVPQQALD VYVAKDGRVK VLDFNPWGAS RFPCFTLGRS WKSCRARKWS 420 WGFEGIGWDQ FLRNADVELR KQTTHPSLVT DGWIHLHGNE NRQGYAAKIQ TTSVNDPVPV 480 VWPTPLDAQS ILARFSKLSS MDQSRKMVNQ ESFTRQRIKK ATEQLRRLQK DNTCRELVAF 540 MFRCILGQAS LDDLQIHDLS EMNWVITQTL REIKARMEAM AAEHQRNLTA LPPLPPLLPP 600 PMLALPPPPP SAVKEAPSRM EDDGMESFPW NLVQSPGGGG RMEGTGLGWD PGMVLPYPYF 660 FGPSSSSQSG QNPNPNPNPN PNPNPNPNPN PFNP

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence

MNLRSSAAIN MYTKRPLNLT KKKKALLNLK AMTRKKVTLA YITNDSERKA SYKKRKKGLI  60
KKVSELSTLC GVDACLIIYS PYDPVPVVWP TPVDAQNILA RFRKLSIMDQ SRKMVNQESF  120
TRQRIKKATE QLRRLQKDNT CRELEAFMFR CILGQASLHD LQFHDLSEMG WVITQTLREI  180
KARMEAMAAE HQRNQTVLPP LPPLLPPPPM LVLPTPPPPA VEEAPPRLED DGMESFPWNL  240
VQSPGGGGDM EGTGLGWDPG MVLPFPYIFG PLTGVCLKTA AWMSSTGSLR CTNFSEIALL  300
LRSSDSVVHD LFHAYDSCTD KTASRPSRFY LALWKWYPSL HDKALVGICQ RELSRSVLGF  360
STAMGSQSNN EDMVPQQALD VYVAKDGRVK VLDFNPWGAS RFPCFTLGRS WKSCRARKWS  420
WGFEGIGWDQ FLRNADVELR KQTTHPSLVT DGWIHLHGNE NRQGYAAKIQ TTSVNDPVPV  480
VWPTPLDAQS ILARFSKLSS MDQSRKMVNQ ESFTRQRIKK ATEQLRRLQK DNTCRELVAF  540
MFRCILGQAS LDDLQIHDLS EMNWVITQTL REIKARMEAM AAEHQRNLTA LPPLPPLLPP  600
PMLALPPPPP SAVKEAPSRM EDDGMESFPW NLVQSPGGGG RMEGTGLGWD PGMVLPYPYF  660
FGPSSSSQSG QNPNPNPNPN PNPNPNPNPN PFNP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	21	57	KKKKALLNLKAMTRKKVTLAYITNDSERKASYKKRKK
2	34	56	RKKVTLAYITNDSERKASYKKRK
3	53	57	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	3e-41	M-type_MADS family protein