PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY80708.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 871aa MW: 97373.8 Da PI: 7.5077

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY80708.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.8	6.6e-07	277	298	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++Cr+f + G C+ Gd+C+F+H TEY80708.1 277 VPCRNFVK-GSCRWGDNCRFSHH 298 79****.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 871 aa Download sequence
MGERRKRKSL WSEEAETKPF TGNHSGIGKD KHPSHSGEQN HEFPASGSHG LPKFRYHSGH 60 PSMESIHEDP VDWINGSYPR VRENAYQEKE IGGENSYYQD MSPKFKYNHL LEDDQSHSRR 120 YQGRGRSRSR SRSRSKGRCR SRSLSRGMER ERTRGESRSD SDARGWTRSR SPLGDYKHQA 180 SGWSDGRSLP EMSNEADFAP GRGRRDDFSK YFLPKNTNHR DGALGGRDTS ESRRSRADHG 240 NDSKLSYSRG ARIESRSDAS DPYHGENEQF LNNSRNVPCR NFVKGSCRWG DNCRFSHHIA 300 SDETCVEGTK RSSSDKDPEH KPYRNRNPLC KYFAAGKCDR DNCKFFHEDP NFNRLEGRLG 360 KVNNDHNSRD GSSRDNDSIS RDNDLSSRDK VNKRDGLRWE SCNEAAGISN DMNPSGGDSS 420 TVIVTESTVD NSNAGQNNTM SHSLGNEKVN WGLPQLTTNL VPVHHAGNGS YGGDAGTTES 480 AIEENMMAEQ DVLVFHGSLL QNPDGNTNKL QVDQRFPLNA WQQNVSLVSH IQHQNHGVVE 540 NNVNGKSVLL GSSSITTEAG SKDMPALNGA EIHHVANLNL SQIQKLQNAI QMAGISETNT 600 MLSFPKSVIS EQSAQYTNTL PSTTLQQVPP VPNQRFENQH STKIPIEEVS NSIEMVPSTA 660 NASGHVPLDC AYMQLNRVTV SHDPISSAEN GRNSNEHEEG TKMPPTDNTE IDNSERSQEQ 720 QVMAHKNAEC DEVKGGMGEQ SKGVQVSKHS ETLEDHGKAD ESIGNKDDKG TRLFKNSLIE 780 FVKDKLKPKW KEGRMSRDVH KTIVKKVVDK ITSSIQTDHV PKTQEKIEQY LSFSEPKITK 840 LVQVNCVIQS VLFKPTSLSK DFLDILRSGC T

Sequence ? help Back to Top

Protein Sequence Length: 871 aa Download sequence

MGERRKRKSL WSEEAETKPF TGNHSGIGKD KHPSHSGEQN HEFPASGSHG LPKFRYHSGH  60
PSMESIHEDP VDWINGSYPR VRENAYQEKE IGGENSYYQD MSPKFKYNHL LEDDQSHSRR  120
YQGRGRSRSR SRSRSKGRCR SRSLSRGMER ERTRGESRSD SDARGWTRSR SPLGDYKHQA  180
SGWSDGRSLP EMSNEADFAP GRGRRDDFSK YFLPKNTNHR DGALGGRDTS ESRRSRADHG  240
NDSKLSYSRG ARIESRSDAS DPYHGENEQF LNNSRNVPCR NFVKGSCRWG DNCRFSHHIA  300
SDETCVEGTK RSSSDKDPEH KPYRNRNPLC KYFAAGKCDR DNCKFFHEDP NFNRLEGRLG  360
KVNNDHNSRD GSSRDNDSIS RDNDLSSRDK VNKRDGLRWE SCNEAAGISN DMNPSGGDSS  420
TVIVTESTVD NSNAGQNNTM SHSLGNEKVN WGLPQLTTNL VPVHHAGNGS YGGDAGTTES  480
AIEENMMAEQ DVLVFHGSLL QNPDGNTNKL QVDQRFPLNA WQQNVSLVSH IQHQNHGVVE  540
NNVNGKSVLL GSSSITTEAG SKDMPALNGA EIHHVANLNL SQIQKLQNAI QMAGISETNT  600
MLSFPKSVIS EQSAQYTNTL PSTTLQQVPP VPNQRFENQH STKIPIEEVS NSIEMVPSTA  660
NASGHVPLDC AYMQLNRVTV SHDPISSAEN GRNSNEHEEG TKMPPTDNTE IDNSERSQEQ  720
QVMAHKNAEC DEVKGGMGEQ SKGVQVSKHS ETLEDHGKAD ESIGNKDDKG TRLFKNSLIE  780
FVKDKLKPKW KEGRMSRDVH KTIVKKVVDK ITSSIQTDHV PKTQEKIEQY LSFSEPKITK  840
LVQVNCVIQS VLFKPTSLSK DFLDILRSGC T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	4	31	RRKRKSLWSEEAETKPFTGNHSGIGKDK
2	5	32	RRKRKSLWSEEAETKPFTGNHSGIGKDK
3	124	132	RGRSRSRSR
4	124	134	RGRSRSRSRSR
5	124	136	RGRSRSRSRSRSK
6	126	134	RGRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-08	C3H family protein