PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY70990.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

LSD

Protein Properties

Length: 321aa MW: 34814.1 Da PI: 3.9822

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY70990.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.6	1.7e-12	265	289	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP GAp+V+C++C +V TEY70990.1 265 CGGCAVLLMYPHGAPAVQCSSCRFV 289 **********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MGEDISMVEE EEIAAAAAAV NAAEEVVVEE EEDDDGPPPG FQFILTLQPP DYDDEEEEDG 60 PPPGFNFVAP KPPQLLPSSD MTSSKQDNMD EDDDDGPPPG WEFGKLVNAL ENTTPSPTDI 120 SDVKEESNED LDEGPPPGWE SVLTCQMPQP QTPPLQPPST VSSNCEMGSK PKTTEMDDEM 180 HQSESEKIPT PGQSSPATPP TQQLLLSEQP SDAVNKEEEN KNDEKRPTPM PQPASPLQQL 240 QSKPHSLTPV PKSSSSAHEV GQVNCGGCAV LLMYPHGAPA VQCSSCRFVT EIGAHNRRPP 300 LSIQQAQARD QRRRHRSTGV R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	8e-16	LSD family protein