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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TEY60130.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 279aa MW: 30556 Da PI: 5.4827 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 59.5 | 7.3e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v + ++fdfl ++v +
TEY60130.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITVQRGAKTVNSLHLKHCVHSYNVFDFLKEVVSK 86
5789************************************************************************99976 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 279 aa Download sequence |
MKKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITVQRGAK 60 TVNSLHLKHC VHSYNVFDFL KEVVSKVPDY GHSDSAADVS KRRRIVASES HDCDEEPKRN 120 IMPETCQPSS TGRGRGRGRG RGRGRGRAGA AERDLPRLEV EPGGPTNTPQ SVKQEQVPSP 180 GRPMEDGSEL KESPKEHKVN DGVSSDSRNF DLNAGVITED NSEKPASAAA STSTEPTPVV 240 KSDEYPGLSE MDRMAIDPAH LAQLGSTRDE EEEDYDAEG |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 101 | 105 | KRRRI |
| 2 | 133 | 142 | RGRGRGRGRG |
| 3 | 133 | 143 | RGRGRGRGRGR |
| 4 | 135 | 144 | RGRGRGRGRG |
| 5 | 135 | 145 | RGRGRGRGRGR |
| 6 | 137 | 146 | RGRGRGRGRG |
| 7 | 137 | 147 | RGRGRGRGRGR |
| 8 | 139 | 148 | RGRGRGRGRG |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G12480.1 | 5e-66 | NF-YC family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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