PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY52201.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

M-type_MADS

Protein Properties

Length: 472aa MW: 53624.3 Da PI: 9.7476

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY52201.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	54.6	1.4e-17	33	78	4	49
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n snr v +skRr g++K A+EL+vLC++e+a+i+ s ++y + TEY52201.1 33 KNLSNRLVALSKRRLGLFKRASELCVLCGTEIAIIVQSLGKHFYSF 78 799***********************************99999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MIPVSINKLF EASIQTEQVG GFSNLFILQK KKKNLSNRLV ALSKRRLGLF KRASELCVLC 60 GTEIAIIVQS LGKHFYSFGH NSTDAVIDRH LGGGEDHERD VVAAPAEFNL YRFVLKELEL 120 EKKRMKVAEE DDGGDVFWWN QGVEELELDE LEQFAMALDE LSKNADRRAK DLMGSFLSLS 180 LAPPYRIALL LIKGWTWSVS KRRLLLRGIN SSSITMASYG SSMSATQPLI PVFKGEGYEY 240 WSIRMQTLLR SQDLWDFVEQ GYADPDEANR LRENKKKDSK ALAIIQQAKE FKGDSKVIVV 300 RLQSLRYDFE TLIMKNGESV AYFLSRAMAT VSQMRSCEEK IVDQTIVEKV LKSLTPKFDH 360 VVVVIEKSKD LSVFSFEELM GFLQAHESRI NRSFEKSNEK AFQVKGEFSN QKEFSTARGR 420 GRGGFRGRGR GQSRGRGGRS DAKQGRQQGD KSHIQCHNCG KYGHVKADCW WK

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MIPVSINKLF EASIQTEQVG GFSNLFILQK KKKNLSNRLV ALSKRRLGLF KRASELCVLC  60
GTEIAIIVQS LGKHFYSFGH NSTDAVIDRH LGGGEDHERD VVAAPAEFNL YRFVLKELEL  120
EKKRMKVAEE DDGGDVFWWN QGVEELELDE LEQFAMALDE LSKNADRRAK DLMGSFLSLS  180
LAPPYRIALL LIKGWTWSVS KRRLLLRGIN SSSITMASYG SSMSATQPLI PVFKGEGYEY  240
WSIRMQTLLR SQDLWDFVEQ GYADPDEANR LRENKKKDSK ALAIIQQAKE FKGDSKVIVV  300
RLQSLRYDFE TLIMKNGESV AYFLSRAMAT VSQMRSCEEK IVDQTIVEKV LKSLTPKFDH  360
VVVVIEKSKD LSVFSFEELM GFLQAHESRI NRSFEKSNEK AFQVKGEFSN QKEFSTARGR  420
GRGGFRGRGR GQSRGRGGRS DAKQGRQQGD KSHIQCHNCG KYGHVKADCW WK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	6e-21	M-type_MADS family protein