PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY37120.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 818aa MW: 94919.1 Da PI: 7.7168

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY37120.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24	6.6e-08	277	296	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G+rC+++H TEY37120.1 277 CPFHLKTGACRFGSRCSRIH 296 *******************9 PP
2	zf-CCCH	21	5.9e-07	407	433	2	26
-S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartG..tCkyGdrCkFaHg 26 + ++C f+++ C++G C+F+H+ TEY37120.1 407 RGAICGEFMKSKlkNCSRGTACNFIHC 433 5689**********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence
MSQQKITVEE DVTGTEAAEY AAGKRKERRK AAKKEKRKNK RKELAEIARR EEEVRLNDPE 60 EQRRIQAEEE QERLRAEEER KHFEETERKI LEAWERKKAL EEKEEEERRR RAEEEERLSK 120 QNQVMFYQVS VESYCHYVPN YTAVPLLLQT MFDMLNEKNQ NGKRLMPGIK CCGDFTISYD 180 AVGHEIEVDD DGWEYVEEGP PEIIWQGNEI IVKKKKVRVK KKDADVHVMK EDPNRPTSNP 240 LPPHSEAFSD NKTAQQLLDT VAQETPNFGT EQDKSHCPFH LKTGACRFGS RCSRIHFYPD 300 KSCTLLIKNM YNGPGLAWEQ DEGLEHTDEE VERAYEEFYE DVHTEFLKFG EIINFKVCRN 360 GSSHLRGNVY VHYNSLDSAV LSYQSVNGRY FAGKQLQCEF VGLTRWRGAI CGEFMKSKLK 420 NCSRGTACNF IHCFRNPGGD YGWADWDKPP PRYWVKEMAA LFGYPDESGS HKKTEHGSTR 480 LIRTGLFPFV KVTLHPLKIK AEQIVLSLEL LGRCDQHFSH LLQLEAFPKF GLPFKEGHGS 540 VRSRSRTSEF SSNSRNYSDD DIRRSEPWRR HKSSDRKHSE KLDYEQHADI SNRSSNLSPA 600 CRKRKLESRG GTSNRMNRQE TDPDEHMHEN DLDSNHHERS RSKRRREKQC RGAGSMGDGW 660 IEDSHGPLNQ SGTAKGKDPR QQNKVSTSPA EQRNCRDTTI HSSDLTGECS DGERQSQHLY 720 GEESPWSHEL RTVVAQNTTA DRDRKGVSLR DRSLPMKRNW RGEEALTTLK RLDLMLQMKV 780 MMKEAVGSPM KEILRSTKNL ITNFDEANQG KELWVRDH

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence

MSQQKITVEE DVTGTEAAEY AAGKRKERRK AAKKEKRKNK RKELAEIARR EEEVRLNDPE  60
EQRRIQAEEE QERLRAEEER KHFEETERKI LEAWERKKAL EEKEEEERRR RAEEEERLSK  120
QNQVMFYQVS VESYCHYVPN YTAVPLLLQT MFDMLNEKNQ NGKRLMPGIK CCGDFTISYD  180
AVGHEIEVDD DGWEYVEEGP PEIIWQGNEI IVKKKKVRVK KKDADVHVMK EDPNRPTSNP  240
LPPHSEAFSD NKTAQQLLDT VAQETPNFGT EQDKSHCPFH LKTGACRFGS RCSRIHFYPD  300
KSCTLLIKNM YNGPGLAWEQ DEGLEHTDEE VERAYEEFYE DVHTEFLKFG EIINFKVCRN  360
GSSHLRGNVY VHYNSLDSAV LSYQSVNGRY FAGKQLQCEF VGLTRWRGAI CGEFMKSKLK  420
NCSRGTACNF IHCFRNPGGD YGWADWDKPP PRYWVKEMAA LFGYPDESGS HKKTEHGSTR  480
LIRTGLFPFV KVTLHPLKIK AEQIVLSLEL LGRCDQHFSH LLQLEAFPKF GLPFKEGHGS  540
VRSRSRTSEF SSNSRNYSDD DIRRSEPWRR HKSSDRKHSE KLDYEQHADI SNRSSNLSPA  600
CRKRKLESRG GTSNRMNRQE TDPDEHMHEN DLDSNHHERS RSKRRREKQC RGAGSMGDGW  660
IEDSHGPLNQ SGTAKGKDPR QQNKVSTSPA EQRNCRDTTI HSSDLTGECS DGERQSQHLY  720
GEESPWSHEL RTVVAQNTTA DRDRKGVSLR DRSLPMKRNW RGEEALTTLK RLDLMLQMKV  780
MMKEAVGSPM KEILRSTKNL ITNFDEANQG KELWVRDH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	42	KRKERRKAAKKEKRKNKRK
2	33	41	KKEKRKNKR
3	96	111	RKKALEEKEEEERRRR
4	639	644	RSRSKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-141	C3H family protein