PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY27887.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 779aa MW: 86417.6 Da PI: 8.4876

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY27887.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.8	3.2e-12	448	472	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ TEY27887.1 448 QPECQYYLQTGTCKFGATCKFHHPR 472 799********************96 PP
2	zf-CCCH	34.3	4e-11	496	518	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++r+G+Ck+G++CkF+H++ TEY27887.1 496 ECGYYMRNGQCKFGSTCKFHHPQ 518 6********************97 PP
3	zf-CCCH	38.6	1.8e-12	641	666	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ TEY27887.1 641 DQPECQFYMKTGDCKFGAVCKFHHPK 666 689*********************96 PP
4	zf-CCCH	37.1	5.2e-12	686	712	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ TEY27887.1 686 PGEPLCVFYSRYGICKFGPSCKFDHPM 712 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 779 aa Download sequence
MAEEDEEKQT LELQLEGAVT ARLQHFKDQA DSLTLESVRR LLEKDLGLEK FAFDGHKRFI 60 RHYLEKIMEA ADETNANPIT ANMDKDEQTS RDEEKALPKQ PDAKSDPKKS SPGKDETMED 120 SPIMGVLTAK SVVGTQSSLS ESSIKQAILE RADHLQANSD NISLAGVRRL LEEDLGLDKN 180 TLDAFKKFIS QQVDEVLKGD KSVTDVKKKV SQGMKSRKLK KGSSEEESDA SQCGSDSDVM 240 GDKVKSRKEA APKRNIKKSE QTKKRKISEN ADVFPKKPTK LAKRQKEEDN NLDEDGNLSE 300 DDQSQSSVER SAMRKEKSAP VYGKRVENLK SIIKACGMSI PPTIYKKAKQ APDNKRETIL 360 VKELEGILTR EGLSKNPSEK VKGRRTLSVC VEETDRPLLS FALLYSRGHV MVNFQCRELP 420 SPPLPPPCTT KAIATARMKG EYPERIGQPE CQYYLQTGTC KFGATCKFHH PRDKAGITGR 480 VSLNVLGYPL RPNEMECGYY MRNGQCKFGS TCKFHHPQPS NMTASLRGSA VYPPIQSPTT 540 SQLSYPLMRA SFIASPRWQS PSSYAPLVMQ QGVVSVPGWN TYIGQLGSVL TSENQPPSAV 600 NIQNDGASHQ GDSGNVASEY GSVPMGYYAF QKDNVFPERP DQPECQFYMK TGDCKFGAVC 660 KFHHPKERLV PVPDCHLSPI GLPLRPGEPL CVFYSRYGIC KFGPSCKFDH PMRAFAYNTP 720 ASSSTDSTAF RRFLASSPGT VPINFSPDGL IDTSSTRNRR LSLSETIQKS SGDNNTDSE

Sequence ? help Back to Top

Protein Sequence Length: 779 aa Download sequence

MAEEDEEKQT LELQLEGAVT ARLQHFKDQA DSLTLESVRR LLEKDLGLEK FAFDGHKRFI  60
RHYLEKIMEA ADETNANPIT ANMDKDEQTS RDEEKALPKQ PDAKSDPKKS SPGKDETMED  120
SPIMGVLTAK SVVGTQSSLS ESSIKQAILE RADHLQANSD NISLAGVRRL LEEDLGLDKN  180
TLDAFKKFIS QQVDEVLKGD KSVTDVKKKV SQGMKSRKLK KGSSEEESDA SQCGSDSDVM  240
GDKVKSRKEA APKRNIKKSE QTKKRKISEN ADVFPKKPTK LAKRQKEEDN NLDEDGNLSE  300
DDQSQSSVER SAMRKEKSAP VYGKRVENLK SIIKACGMSI PPTIYKKAKQ APDNKRETIL  360
VKELEGILTR EGLSKNPSEK VKGRRTLSVC VEETDRPLLS FALLYSRGHV MVNFQCRELP  420
SPPLPPPCTT KAIATARMKG EYPERIGQPE CQYYLQTGTC KFGATCKFHH PRDKAGITGR  480
VSLNVLGYPL RPNEMECGYY MRNGQCKFGS TCKFHHPQPS NMTASLRGSA VYPPIQSPTT  540
SQLSYPLMRA SFIASPRWQS PSSYAPLVMQ QGVVSVPGWN TYIGQLGSVL TSENQPPSAV  600
NIQNDGASHQ GDSGNVASEY GSVPMGYYAF QKDNVFPERP DQPECQFYMK TGDCKFGAVC  660
KFHHPKERLV PVPDCHLSPI GLPLRPGEPL CVFYSRYGIC KFGPSCKFDH PMRAFAYNTP  720
ASSSTDSTAF RRFLASSPGT VPINFSPDGL IDTSSTRNRR LSLSETIQKS SGDNNTDSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-137	C3H family protein