PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY17301.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

M-type_MADS

Protein Properties

Length: 771aa MW: 84723.7 Da PI: 6.2967

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY17301.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.5	2.6e-16	17	61	3	47
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 ienk v+fskRr g+ KKA+ELS+LC+++v iifs++g + TEY17301.1 17 IENKDDLLVSFSKRRVGVYKKASELSTLCGVDVGAIIFSPSGIPH 61 9999999*********************************99655 PP

Sequence ? help Back to Top
Protein Sequence Length: 771 aa Download sequence
MSEKKTRGRQ KIPIRLIENK DDLLVSFSKR RVGVYKKASE LSTLCGVDVG AIIFSPSGIP 60 HSFFTPDFDS VVHGCRRDGD APQTRIHEIN RRLDDVVEQQ EREERREKHL GGGGEMGWWE 120 FPLESLDAEQ VREQIEWFRT FREKIKGRVE ELNNGGASSA AAAAGDGGGV LGGESLFAAP 180 VSDEAYGFAP GFDGGRYGYG AAAFGVGWRM SIFGGRRISA VMDMVVFLGD MERLDLPNMN 240 VHLVMPFTVI MPDSGALVDG PQTGLPGSNT GAQTDPEEQE AVYDVMRATG NDWATEIPNV 300 CRGRWHGIEC VPDKDNVFHV VSLSFGSLSD DTAFPTCDPT RSSISPSITK LPHLRTLFFY 360 RCSFPNITFP SLSILDLNQN HLKGSLPNSL LSCNSLLKID LSRNRISGPI PNLENLENLV 420 LLDLSYNILT GPLPNTLQIQ RSLQALILNG NPSISTTIPK DMFLGLNNLI ILGLSNTDLK 480 GPIPESLGDL AMLRVLHLDG NQLNGTIPST FAKLNSLSEL RLDNNKLVGP IPFKRERVWR 540 MGRKLRIHNN LGLCYDEKSG LGDDLDSLAS AGIGLCDVPK NVPPSSVQHI STLDYGNMFN 600 STTNSSASPH KKKAFVGIAV KRFKSWSSKP DMEFSVEVEI VARGYCVEGA QSVTSLQNTL 660 CWVGKASESC DVYSFGILLL ELASGKKPVQ KFNSTRKCDI TEWALLLAHE RKLSQLVDPK 720 LNGKYVEDEL ERVVLVGLRC PDIQPEKRPT MLQVIKLLEG DEEKLALAGK G

Sequence ? help Back to Top

Protein Sequence Length: 771 aa Download sequence

MSEKKTRGRQ KIPIRLIENK DDLLVSFSKR RVGVYKKASE LSTLCGVDVG AIIFSPSGIP  60
HSFFTPDFDS VVHGCRRDGD APQTRIHEIN RRLDDVVEQQ EREERREKHL GGGGEMGWWE  120
FPLESLDAEQ VREQIEWFRT FREKIKGRVE ELNNGGASSA AAAAGDGGGV LGGESLFAAP  180
VSDEAYGFAP GFDGGRYGYG AAAFGVGWRM SIFGGRRISA VMDMVVFLGD MERLDLPNMN  240
VHLVMPFTVI MPDSGALVDG PQTGLPGSNT GAQTDPEEQE AVYDVMRATG NDWATEIPNV  300
CRGRWHGIEC VPDKDNVFHV VSLSFGSLSD DTAFPTCDPT RSSISPSITK LPHLRTLFFY  360
RCSFPNITFP SLSILDLNQN HLKGSLPNSL LSCNSLLKID LSRNRISGPI PNLENLENLV  420
LLDLSYNILT GPLPNTLQIQ RSLQALILNG NPSISTTIPK DMFLGLNNLI ILGLSNTDLK  480
GPIPESLGDL AMLRVLHLDG NQLNGTIPST FAKLNSLSEL RLDNNKLVGP IPFKRERVWR  540
MGRKLRIHNN LGLCYDEKSG LGDDLDSLAS AGIGLCDVPK NVPPSSVQHI STLDYGNMFN  600
STTNSSASPH KKKAFVGIAV KRFKSWSSKP DMEFSVEVEI VARGYCVEGA QSVTSLQNTL  660
CWVGKASESC DVYSFGILLL ELASGKKPVQ KFNSTRKCDI TEWALLLAHE RKLSQLVDPK  720
LNGKYVEDEL ERVVLVGLRC PDIQPEKRPT MLQVIKLLEG DEEKLALAGK G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29962.1	6e-19	M-type_MADS family protein