PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G25293

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

AP2

Protein Properties

Length: 470aa MW: 52297 Da PI: 5.3979

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G25293	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.8	1.3e-18	87	137	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrdp++ng +r++lg++ tae+A a+++a+ k++g Ro07_G25293 87 HFRGVRRRP-WGKYAAEIRDPKKNG--TRVWLGTYETAEDAGLAYDRAAFKMRG 137 69*****.*******9998..***********************98 PP
2	AP2	56.8	5.5e-18	321	371	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrdp++ng r++lg++ tae+A a+++a+ k++g Ro07_G25293 321 HFRGVRRRP-WGKYAAEIRDPKKNG--IRVWLGTYETAEDAGLAYDRAAFKMRG 371 69*****.*******9998..***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MATETESFSN SDWALLESIR QHLFDDEFDT QSAFFADSPD QSTSSSNCTE ISNNDVEITE 60 PNQVFTSKLE VNVAAARENH APSGPRHFRG VRRRPWGKYA AEIRDPKKNG TRVWLGTYET 120 AEDAGLAYDR AAFKMRGSKA KLNFPHLIGT HDMEIGRVAP KRCSPEPSSL SSTLSDHVSP 180 KPKRRRSGVN SAAAKAKLDE AAQEFHVFQV DSFTFGSELL AEDMVLLSPS ECSDILSFFF 240 SNSNWALLES IRQHLLDDDF EFDTQSTVFT DSADQCTSSF NSIEISSNDL EITEEPDQAF 300 TSKLEVEVAA REQNAPSGQR HFRGVRRRPW GKYAAEIRDP KKNGIRVWLG TYETAEDAGL 360 AYDRAAFKMR GSKAKLNFPH LIGTHDMEVG RIGPKRRSPE PSSPSSEDGS PKPKRRRSGV 420 DSAAAKAKLD KAAQEFHVFQ VDSFTFGSEL LVEDMALLSP SECSDILSFL

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MATETESFSN SDWALLESIR QHLFDDEFDT QSAFFADSPD QSTSSSNCTE ISNNDVEITE  60
PNQVFTSKLE VNVAAARENH APSGPRHFRG VRRRPWGKYA AEIRDPKKNG TRVWLGTYET  120
AEDAGLAYDR AAFKMRGSKA KLNFPHLIGT HDMEIGRVAP KRCSPEPSSL SSTLSDHVSP  180
KPKRRRSGVN SAAAKAKLDE AAQEFHVFQV DSFTFGSELL AEDMVLLSPS ECSDILSFFF  240
SNSNWALLES IRQHLLDDDF EFDTQSTVFT DSADQCTSSF NSIEISSNDL EITEEPDQAF  300
TSKLEVEVAA REQNAPSGQR HFRGVRRRPW GKYAAEIRDP KKNGIRVWLG TYETAEDAGL  360
AYDRAAFKMR GSKAKLNFPH LIGTHDMEVG RIGPKRRSPE PSSPSSEDGS PKPKRRRSGV  420
DSAAAKAKLD KAAQEFHVFQ VDSFTFGSEL LVEDMALLSP SECSDILSFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	395	417	KRRSPEPSSPSSEDGSPKPKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	3e-38	ERF family protein