PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G24568

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

SBP

Protein Properties

Length: 459aa MW: 51312.6 Da PI: 7.9365

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G24568	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	104.7	6.6e-33	183	270	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS...........SEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs...........rfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC+ l +akeyhrrhkvCe+hska++v+v gleqrfCqqCs rfh +sefDe+krsCrrrLa+hnerrrk + Ro07_G24568 183 RCQVEGCHLALVSAKEYHRRHKVCEMHSKASKVVVLGLEQRFCQQCSrcsnewwvngyRFHVVSEFDESKRSCRRRLAGHNERRRKCT 270 6*******************************************9555555555555************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MEIGGSMFGH SISSRSGQNG NNNTWDIWEM GNNANHNLLY MTASTAAVTI AEPPSGSRTC 60 SDATAGHAPM CNNNNPRGSY GEDNGVVVFQ HGQLQQQNSF SNLYDGDHHH LHHQHRCGSH 120 YLPDPHLMCL KLGKRHYFED AAPPLLDHRH VAGFPLAVGG MKRGKNLYGA GGGSSASSLK 180 VPRCQVEGCH LALVSAKEYH RRHKVCEMHS KASKVVVLGL EQRFCQQCSR CSNEWWVNGY 240 RFHVVSEFDE SKRSCRRRLA GHNERRRKCT HDSLSRSSSQ EKKLMMAAAG RFPYLSSSPT 300 GRSALSLLSS SKSSSDSWVL SPSDLSSRSR AALRELIAEN RAAILARQLI SSDRSNSNWE 360 DSSHYNNHTT QDFGNHLSQS WPSNSVESHH QQQHQMFSDD QHSWERFNEN GAHLTLDLMQ 420 QPPSPAYETF LPARDTSTKA EEDDCDLWRW NSFQGASVV

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MEIGGSMFGH SISSRSGQNG NNNTWDIWEM GNNANHNLLY MTASTAAVTI AEPPSGSRTC  60
SDATAGHAPM CNNNNPRGSY GEDNGVVVFQ HGQLQQQNSF SNLYDGDHHH LHHQHRCGSH  120
YLPDPHLMCL KLGKRHYFED AAPPLLDHRH VAGFPLAVGG MKRGKNLYGA GGGSSASSLK  180
VPRCQVEGCH LALVSAKEYH RRHKVCEMHS KASKVVVLGL EQRFCQQCSR CSNEWWVNGY  240
RFHVVSEFDE SKRSCRRRLA GHNERRRKCT HDSLSRSSSQ EKKLMMAAAG RFPYLSSSPT  300
GRSALSLLSS SKSSSDSWVL SPSDLSSRSR AALRELIAEN RAAILARQLI SSDRSNSNWE  360
DSSHYNNHTT QDFGNHLSQS WPSNSVESHH QQQHQMFSDD QHSWERFNEN GAHLTLDLMQ  420
QPPSPAYETF LPARDTSTKA EEDDCDLWRW NSFQGASVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	3e-34	SBP family protein