PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G24567

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

SBP

Protein Properties

Length: 388aa MW: 43591.1 Da PI: 8.1789

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G24567	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	71.8	1.3e-22	205	252	1	48
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCs Ro07_G24567 205 RCQAEGCHADLSQAKHYHRRHKVCEFHSKASTVVANGLTQRFCQQCSS 252 6*********************************************95 PP
2	SBP	49.6	1.1e-15	259	294	43	78
-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 43 CqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C C rfh l efD++krsCr+rLa+hn+rrrk+q+ Ro07_G24567 259 CENCFRFHLLAEFDNGKRSCRKRLADHNRRRRKTQQ 294 9********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MTTEFETWSS VSKIKQKKEE EEKHAVGEEM LDYEWANPSS VMLAPDDGSE SVHGSDPTRH 60 HHQHSNSILD HYATTQAAFN NLLPPQPQQS ANSFAHHFHQ AQAHQVHSLF DPNVFASASS 120 YAPTHHHHHH HGHHPMLSLD PSIPGHQGLV LIPKSEDVGP PVDIASRIGL NLGGRTYFSS 180 EDDFMNRLYR RSRPAEHGSI VNLPRCQAEG CHADLSQAKH YHRRHKVCEF HSKASTVVAN 240 GLTQRFCQQC SSVLTDYGCE NCFRFHLLAE FDNGKRSCRK RLADHNRRRR KTQQPNQENR 300 NSQQPPESTR NSSSDNVTRS PPESAGHSSS AVTVAVSPPR MGLDCFRPRQ YQTTTSSGSS 360 SSLFFSSGVM LWKEARASSQ ELRKQCKT

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MTTEFETWSS VSKIKQKKEE EEKHAVGEEM LDYEWANPSS VMLAPDDGSE SVHGSDPTRH  60
HHQHSNSILD HYATTQAAFN NLLPPQPQQS ANSFAHHFHQ AQAHQVHSLF DPNVFASASS  120
YAPTHHHHHH HGHHPMLSLD PSIPGHQGLV LIPKSEDVGP PVDIASRIGL NLGGRTYFSS  180
EDDFMNRLYR RSRPAEHGSI VNLPRCQAEG CHADLSQAKH YHRRHKVCEF HSKASTVVAN  240
GLTQRFCQQC SSVLTDYGCE NCFRFHLLAE FDNGKRSCRK RLADHNRRRR KTQQPNQENR  300
NSQQPPESTR NSSSDNVTRS PPESAGHSSS AVTVAVSPPR MGLDCFRPRQ YQTTTSSGSS  360
SSLFFSSGVM LWKEARASSQ ELRKQCKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	4e-69	SBP family protein