PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G24009
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 765aa    MW: 83200.9 Da    PI: 6.6552
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G24009genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.82.9e-21135190156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++eLe+lF+++++p++++r eL+++l+L++rqVk+WFqNrR+++k
  Ro07_G24009 135 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLNLETRQVKFWFQNRRTQMK 190
                  688999***********************************************999 PP
2START162.33.6e-5134449665206
                  HCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEE CS
        START  65 llddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSg 151
                   +d   +W e+++    + +t++vissg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvSvd  ++++  + +v +++lpSg
  Ro07_G24009 344 AMDELNRWLEMFPcmiaRTSTTDVISSGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSVDAIRDNSGAPTFVNCRRLPSG 441
                  566666******************************************************************************9************* PP

                  EEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 152 iliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                  +++++++ng+skvtwveh++++++++h l+r+l++sg+ +ga++wvatlqrqc++
  Ro07_G24009 442 CVVQDMPNGYSKVTWVEHAEYDESQVHHLYRPLLSSGMGFGAQRWVATLQRQCQC 496
                  *****************************************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    
MSFGGFLDNS SGSGGARIVA DIPYNNHHHH HHNSSNNNVN TNMPSSAIAQ PRLVTQSLTK  60
SMFNSPGLSL ALTNADGGGD AARMAENFEA NNNNAGGRRS REEENEISRS GSDNMDGTGS  120
GDEQDAADNS NPRKKKRYHR HTPQQIQELE ALFKECPHPD EKQRLELSRR LNLETRQVKF  180
WFQNRRTQMK TQLERHENSL LRQENDKLRA ENMSIRDAMR NPICTNCGGP AMIGDISIEE  240
QHLRIDNARL KDELDRVCAL AGKFLGRPIS SLGPSMGPPL PSSALELGVG NNGFGGMSSV  300
ATTMPLGPDF GGGLGPGMPI VAHNRPVAGG LDERTMFLEL ALAAMDELNR WLEMFPCMIA  360
RTSTTDVISS GMGGTRNGAL QLMHAELQVL SPLVPVREVN FLRFCKQHAE GVWAVVDVSV  420
DAIRDNSGAP TFVNCRRLPS GCVVQDMPNG YSKVTWVEHA EYDESQVHHL YRPLLSSGMG  480
FGAQRWVATL QRQCQCLAIL MSSTVPARDH ANTITQSGRK SMLKLAQRMT DNFCAGVCAS  540
TVHKWNKLNA GNVDEDVRYM TRESMDDPGE PPGIVLSAAT SVWLPVSPQR LFDFLRDERL  600
RSEWDILSNG GPMQEMAHIA KGQDQGNCVS LLRARAMNAN QNSMLILQET CIDAAGSLVV  660
YAPVDIPAMH VVMNGGDSAY VALLPSGFAI VPDGPGSRGP NGADAKGHGG DGTQQRVSGS  720
LLTMTFQILV NSLPSAKLTV ESVETVNNLI SCTVQKIKAA LQCES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52170.10.0HD-ZIP family protein